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      Elk1 affects katanin and spastin proteins via differential transcriptional and post-transcriptional regulations

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      PLoS ONE
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          Abstract

          Microtubule severing, which is highly critical for the survival of both mitotic and post-mitotic cells, has to be precisely adjusted by regulating the expression levels of severing proteins, katanin and spastin. Even though severing mechanism is relatively well-studied, there are limited studies for the transcriptional regulation of microtubule severing proteins. In this study, we identified the main regulatory region of KATNA1 gene encoding katanin-p60 as 5’ UTR, which has a key role for its expression, and showed Elk1 binding to KATNA1. Furthermore, we identified that Elk1 decreased katanin-p60 and spastin protein expressions, while mRNA levels were increased upon Elk1 overexpression. In addition, SUMOylation is a known post-translational modification regulating Elk1 activity. A previous study suggested that K230, K249, K254 amino acids in the R domain are the main SUMOylation sites; however, we identified that these amino acids are neither essential nor substantial for Elk1 SUMOylation. Also, we determined that KATNA1 methylation results in the reduction of Elk1 binding whereas SPG4 methylation does not. Together, our findings emphasizing the impacts of both transcriptional and post-transcriptional regulations of katanin-p60 and spastin suggest that Elk1 has a key role for differential expression patterns of microtubule severing proteins, thereby regulating cellular functions through alterations of microtubule organization.

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          Most cited references55

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          PROMO: detection of known transcription regulatory elements using species-tailored searches.

          We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.
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            The ETS-domain transcription factor family.

            ETS-domain transcription-factor networks represent a model for how combinatorial gene expression is achieved. These transcription factors interact with a multitude of co-regulatory partners to elicit gene-specific responses and drive distinct biological processes. These proteins are controlled by a complex series of inter and intramolecular interactions, and signalling pathways impinge on these proteins to further regulate their action.
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              Spastin, a new AAA protein, is altered in the most frequent form of autosomal dominant spastic paraplegia.

              Autosomal dominant hereditary spastic paraplegia (AD-HSP) is a genetically heterogeneous neurodegenerative disorder characterized by progressive spasticity of the lower limbs. Among the four loci causing AD-HSP identified so far, the SPG4 locus at chromosome 2p2-1p22 has been shown to account for 40-50% of all AD-HSP families. Using a positional cloning strategy based on obtaining sequence of the entire SPG4 interval, we identified a candidate gene encoding a new member of the AAA protein family, which we named spastin. Sequence analysis of this gene in seven SPG4-linked pedigrees revealed several DNA modifications, including missense, nonsense and splice-site mutations. Both SPG4 and its mouse orthologue were shown to be expressed early and ubiquitously in fetal and adult tissues. The sequence homologies and putative subcellular localization of spastin suggest that this ATPase is involved in the assembly or function of nuclear protein complexes.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draft
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Visualization
                Role: Data curationRole: MethodologyRole: Visualization
                Role: ConceptualizationRole: Funding acquisitionRole: Project administrationRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                21 February 2019
                2019
                : 14
                : 2
                : e0212518
                Affiliations
                [001]Department of Molecular Biology and Genetics, Istanbul Technical University, Maslak, Istanbul, Turkey
                Virginia Commonwealth University, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0001-5150-5349
                Article
                PONE-D-18-30727
                10.1371/journal.pone.0212518
                6383945
                30789974
                d5b98af4-1f44-47fd-9f68-6c7e2c68cd72
                © 2019 Kelle et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 24 October 2018
                : 4 February 2019
                Page count
                Figures: 10, Tables: 7, Pages: 31
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100007504, Istanbul Teknik Üniversitesi;
                Award ID: ID: 415 #38224
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100008968, Istanbul Kalkinma Ajansi;
                Award ID: TR10/16/YNY/0130
                Award Recipient :
                This study was funded by Istanbul Technical University Scientific Research Projects-ITU-BAP [Project ID:415 #38224] to AK and Istanbul Kalkınma Ajansı [TR10/16/YNY/0130] to AK. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and life sciences
                Biochemistry
                Nucleic acids
                RNA
                Messenger RNA
                Untranslated Regions
                5' Utr
                Biology and life sciences
                Cell biology
                Chromosome biology
                Chromatin
                Chromatin modification
                DNA methylation
                Biology and life sciences
                Genetics
                Epigenetics
                Chromatin
                Chromatin modification
                DNA methylation
                Biology and life sciences
                Genetics
                Gene expression
                Chromatin
                Chromatin modification
                DNA methylation
                Biology and life sciences
                Genetics
                DNA
                DNA modification
                DNA methylation
                Biology and life sciences
                Biochemistry
                Nucleic acids
                DNA
                DNA modification
                DNA methylation
                Biology and life sciences
                Genetics
                Epigenetics
                DNA modification
                DNA methylation
                Biology and life sciences
                Genetics
                Gene expression
                DNA modification
                DNA methylation
                Biology and Life Sciences
                Cell Biology
                Cellular Structures and Organelles
                Cytoskeleton
                Microtubules
                Biology and life sciences
                Biochemistry
                Proteins
                Post-translational modification
                SUMOylation
                Biology and Life Sciences
                Biochemistry
                Nucleotides
                Oligonucleotides
                Biology and Life Sciences
                Genetics
                Gene Expression
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Transfection
                Research and Analysis Methods
                Molecular Biology Techniques
                Transfection
                Research and Analysis Methods
                Bioassays and Physiological Analysis
                Biochemical Analysis
                Enzyme Assays
                Luciferase Assay
                Custom metadata
                All relevant data are within the manuscript and its Supporting Information files.

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                Uncategorized

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