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      The ethylene response factor AtERF4 negatively regulates the iron deficiency response in Arabidopsis thaliana

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          Abstract

          Iron (Fe) deficiency is one of many conditions that can seriously damage crops. Low levels of photosynthesis can lead to the degradation of chlorophyll content and impaired respiration in affected plants, which together cause poor growth and reduce quality. Although ethylene plays an important role in responses to Fe deficiency, a limited number of studies have been carried out on ethylene response factor (ERFs) as components of plant regulation mechanisms. Thus, this study aimed to investigate the role of AtERF4 in plant responses to Fe deficiency. Results collected when Arabidopsis thaliana was grown under Fe deficient conditions as well as in the presence of 1-aminocyclopropane-1-carboxylic acid (ACC) revealed that leaf chlorosis did not occur over short timescales and that chloroplast structural integrity was retained. At the same time, expression of the chlorophyll degradation-related genes AtPAO and AtCLH1 was inhibited and net H + root flux was amplified. Our results show that chlorophyll content was enhanced in the mutant erf4, while expression of the chlorophyll degradation gene AtCLH1 was reduced. Ferric reductase activity in roots was also significantly higher in the mutant than in wild type plants, while erf4 caused high levels of expression of the genes AtIRT1 and AtHA2 under Fe deficient conditions. We also utilized yeast one-hybrid technology in this study to determine that AtERF4 binds directly to the AtCLH1 and AtITR1 promoter. Observations show that transient over-expression of AtERF4 resulted in rapid chlorophyll degradation in the leaves of Nicotiana tabacum and the up-regulation of gene AtCLH1 expression. In summary, AtERF4 plays an important role as a negative regulator of Fe deficiency responses, we hypothesize that AtERF4 may exert a balancing effect on plants subject to nutrition stress.

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          DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression.

          DRE/CRT is a cis-acting element that is involved in gene expression responsive to drought and low-temperature stress in higher plants. DREB1A/CBF3 and DREB2A are transcription factors that specifically bind to DRE/CRT in Arabidopsis. We precisely analyzed the DNA-binding specificity of DREBs. Both DREBs specifically bound to six nucleotides (A/GCCGAC) of DRE. However, these proteins had different binding specificities to the second or third nucleotides of DRE. Gel mobility shift assay using mutant DREB proteins showed that the two amino acids, valine and glutamic acid conserved in the ERF/AP2 domains, especially valine, have important roles in DNA-binding specificity. In the Arabidopsis genome, 145 DREB/ERF-related proteins are encoded. These proteins were classified into five groups-AP-2 subfamily, RAV subfamily, DREB subfamily, ERF subfamily, and others. The DREB subfamily included three novel DREB1A- and six DREB2A-related proteins. We analyzed expression of novel genes for these proteins and discuss their roles in stress-responsive gene expression.
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            Ethylene Biosynthesis and its Regulation in Higher Plants

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              Cross talk between signaling pathways in pathogen defense.

              Plant defense in response to microbial attack is regulated through a complex network of signaling pathways that involve three signaling molecules: salicylic acid (SA), jasmonic acid (JA) and ethylene. The SA and JA signaling pathways are mutually antagonistic. This regulatory cross talk may have evolved to allow plants to fine-tune the induction of their defenses in response to different plant pathogens.
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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: Writing – original draft
                Role: Writing – original draft
                Role: Formal analysis
                Role: Data curation
                Role: MethodologyRole: Software
                Role: Formal analysisRole: Software
                Role: Project administrationRole: Writing – original draft
                Role: Formal analysisRole: Software
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                18 October 2017
                2017
                : 12
                : 10
                : e0186580
                Affiliations
                [1 ] Institute for Horticultural Plants, College of Horticulture, China Agricultural University, Beijing, China
                [2 ] Key Laboratory of Beijing Municipality of Stress Physiology and Molecular Biology of Fruit Trees, Beijing, China
                National Taiwan University, TAIWAN
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-6303-385X
                Article
                PONE-D-17-24751
                10.1371/journal.pone.0186580
                5646859
                29045490
                d5289300-e9e0-403c-b85e-d0425c242722
                © 2017 Liu et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 June 2017
                : 3 October 2017
                Page count
                Figures: 8, Tables: 0, Pages: 22
                Funding
                Funded by: the earmarked fund for China Agriculture Research System
                Award ID: CARS-27
                Award Recipient :
                Funded by: National Key Technology R&D Program
                Award ID: 2013BAD02B01-4, 2014BAD16B03
                Award Recipient :
                Funded by: Beijing Municipal Education Commission
                Award ID: CEFF-PXM2017_014207_000043
                Award Recipient :
                Financial support for this research was provided by the earmarked fund for China Agriculture Research System (CARS-27), National Key Technology R&D Program (2013BAD02B01-4, 2014BAD16B03) and grants from the Beijing Municipal Education Commission (CEFF-PXM2017_014207_000043).
                Categories
                Research Article
                Biology and Life Sciences
                Nutrition
                Nutritional Deficiencies
                Iron Deficiency
                Medicine and Health Sciences
                Nutrition
                Nutritional Deficiencies
                Iron Deficiency
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Ethylene
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Ethylene
                Biology and Life Sciences
                Biochemistry
                Hormones
                Plant Hormones
                Ethylene
                Biology and Life Sciences
                Biochemistry
                Plant Biochemistry
                Plant Hormones
                Ethylene
                Biology and Life Sciences
                Plant Science
                Plant Biochemistry
                Plant Hormones
                Ethylene
                Biology and Life Sciences
                Cell Biology
                Cellular Structures and Organelles
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Plant Cell Biology
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Plant Science
                Plant Cell Biology
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Plant Cells
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Plant Cell Biology
                Plant Cells
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Plant Science
                Plant Cell Biology
                Plant Cells
                Chloroplasts
                Chlorophyll
                Physical Sciences
                Materials Science
                Materials by Attribute
                Pigments
                Organic Pigments
                Chlorophyll
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Biology and Life Sciences
                Genetics
                Gene Expression
                Research and Analysis Methods
                Experimental Organism Systems
                Model Organisms
                Arabidopsis Thaliana
                Research and Analysis Methods
                Model Organisms
                Arabidopsis Thaliana
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Brassica
                Arabidopsis Thaliana
                Research and Analysis Methods
                Experimental Organism Systems
                Plant and Algal Models
                Arabidopsis Thaliana
                Biology and life sciences
                Biochemistry
                Proteins
                DNA-binding proteins
                Transcription Factors
                Biology and Life Sciences
                Genetics
                Gene Expression
                Gene Regulation
                Transcription Factors
                Biology and Life Sciences
                Biochemistry
                Proteins
                Regulatory Proteins
                Transcription Factors
                Biology and Life Sciences
                Genetics
                Gene Expression
                Gene Regulation
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

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