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      Characterization of merozoite-specific thrombospondin-related anonymous protein (MTRAP) in Plasmodium vivax and P. knowlesi parasites

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          Abstract

          Plasmodium vivax, the most widespread human malaria parasite, and P. knowlesi, an emerging Plasmodium that infects humans, are the phylogenetically closest malarial species that infect humans, which may induce cross-species reactivity across most co-endemic areas in Southeast Asia. The thrombospondin-related anonymous protein (TRAP) family is indispensable for motility and host cell invasion in the growth and development of Plasmodium parasites. The merozoite-specific TRAP (MTRAP), expressed in blood-stage merozoites, is supposed to be essential for human erythrocyte invasion. We aimed to characterize MTRAPs in blood-stage P. vivax and P. knowlesi parasites and ascertain their cross-species immunoreactivity. Recombinant P. vivax and P. knowlesi MTRAPs of full-length ectodomains were expressed in a mammalian expression system. The MTRAP-specific immunoglobulin G, obtained from immune animals, was used in an immunofluorescence assay for subcellular localization and invasion inhibitory activity in blood-stage parasites was determined. The cross-species humoral immune responses were analyzed in the sera of patients with P. vivax or P. knowlesi infections. The MTRAPs of P. vivax (PvMTRAP) and P. knowlesi (PkMTRAP) were localized on the rhoptry body of merozoites in blood-stage parasites. Both anti-PvMTRAP and anti-PkMTRAP antibodies inhibited erythrocyte invasion of blood-stage P. knowlesi parasites. The humoral immune response to PvMTRAP showed high immunogenicity, longevity, and cross-species immunoreactivity with P. knowlesi. MTRAPs are promising candidates for development of vaccines and therapeutics against vivax and knowlesi malaria.

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          Highly accurate protein structure prediction with AlphaFold

          Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of painstaking effort required to determine a single protein structure. Accurate computational approaches are needed to address this gap and to enable large-scale structural bioinformatics. Predicting the three-dimensional structure that a protein will adopt based solely on its amino acid sequence—the structure prediction component of the ‘protein folding problem’ 8 —has been an important open research problem for more than 50 years 9 . Despite recent progress 10 – 14 , existing methods fall far short of atomic accuracy, especially when no homologous structure is available. Here we provide the first computational method that can regularly predict protein structures with atomic accuracy even in cases in which no similar structure is known. We validated an entirely redesigned version of our neural network-based model, AlphaFold, in the challenging 14th Critical Assessment of protein Structure Prediction (CASP14) 15 , demonstrating accuracy competitive with experimental structures in a majority of cases and greatly outperforming other methods. Underpinning the latest version of AlphaFold is a novel machine learning approach that incorporates physical and biological knowledge about protein structure, leveraging multi-sequence alignments, into the design of the deep learning algorithm. AlphaFold predicts protein structures with an accuracy competitive with experimental structures in the majority of cases using a novel deep learning architecture.
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            SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

            Protein structure homology modelling has become a routine technique to generate 3D models for proteins when experimental structures are not available. Fully automated servers such as SWISS-MODEL with user-friendly web interfaces generate reliable models without the need for complex software packages or downloading large databases. Here, we describe the latest version of the SWISS-MODEL expert system for protein structure modelling. The SWISS-MODEL template library provides annotation of quaternary structure and essential ligands and co-factors to allow for building of complete structural models, including their oligomeric structure. The improved SWISS-MODEL pipeline makes extensive use of model quality estimation for selection of the most suitable templates and provides estimates of the expected accuracy of the resulting models. The accuracy of the models generated by SWISS-MODEL is continuously evaluated by the CAMEO system. The new web site allows users to interactively search for templates, cluster them by sequence similarity, structurally compare alternative templates and select the ones to be used for model building. In cases where multiple alternative template structures are available for a protein of interest, a user-guided template selection step allows building models in different functional states. SWISS-MODEL is available at http://swissmodel.expasy.org/.
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              Global Epidemiology of Plasmodium vivax

              Plasmodium vivax is the most widespread human malaria, putting 2.5 billion people at risk of infection. Its unique biological and epidemiological characteristics pose challenges to control strategies that have been principally targeted against Plasmodium falciparum. Unlike P. falciparum, P. vivax infections have typically low blood-stage parasitemia with gametocytes emerging before illness manifests, and dormant liver stages causing relapses. These traits affect both its geographic distribution and transmission patterns. Asymptomatic infections, high-risk groups, and resulting case burdens are described in this review. Despite relatively low prevalence measurements and parasitemia levels, along with high proportions of asymptomatic cases, this parasite is not benign. Plasmodium vivax can be associated with severe and even fatal illness. Spreading resistance to chloroquine against the acute attack, and the operational inadequacy of primaquine against the multiple attacks of relapse, exacerbates the risk of poor outcomes among the tens of millions suffering from infection each year. Without strategies accounting for these P. vivax-specific characteristics, progress toward elimination of endemic malaria transmission will be substantially impeded.
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                Author and article information

                Contributors
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                URI : https://loop.frontiersin.org/people/2585813Role: Role: Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/2603519Role: Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/894191Role: Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/1841034Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/637048Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/2564699Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/1237855Role: Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/464817Role: Role: Role: Role: Role: Role: Role:
                Journal
                Front Cell Infect Microbiol
                Front Cell Infect Microbiol
                Front. Cell. Infect. Microbiol.
                Frontiers in Cellular and Infection Microbiology
                Frontiers Media S.A.
                2235-2988
                23 February 2024
                2024
                : 14
                : 1354880
                Affiliations
                [1] 1 Department of Medical Environmental Biology and Tropical Medicine, Kangwon National University School of Medicine , Chuncheon, Gangwon-do, Republic of Korea
                [2] 2 Department of Obstetrics and Gynecology, Kangwon National University School of Medicine , Chuncheon, Gangwon-d, Republic of Korea
                [3] 3 Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine , London, United Kingdom
                [4] 4 Department of Parasitology, Faculty of Medicine, Universiti Malaya , Kuala Lumpur, Malaysia
                [5] 5 Department of Medical Research , Yangon, Myanmar
                [6] 6 Department of Physiology, School of Medicine, Kangwon National University , Chuncheon, Gangwon-do, Republic of Korea
                [7] 7 Department of Pharmacology, School of Medicine, Kangwon National University , Chuncheon, Gangwon-do, Republic of Korea
                [8] 8 Department of Pathogen Biology and Immunology, School of Medicine, Yangzhou University , Yangzhou, Jiangsu, China
                Author notes

                Edited by: Benoit Malleret, National University of Singapore, Singapore

                Reviewed by: Isabelle Guerin-Bonne, National University of Singapore, Singapore

                Guillaume Carissimo, A*STAR Infectious Disease Labs, Singapore

                Article
                10.3389/fcimb.2024.1354880
                10920329
                38465236
                d4675f60-978a-4f9f-857f-fa36941a651e
                Copyright © 2024 Sy Thau, Nguyen, Truong, Chu, Na, Moon, Lau, Nyunt, Park, Chun, Lu, Lee, Han and Han

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 December 2023
                : 08 February 2024
                Page count
                Figures: 7, Tables: 1, Equations: 0, References: 62, Pages: 13, Words: 7072
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This study was supported by a National Research Foundation of Korea (NRF) grant (NRF-2021R1A2C2008235) funded by the Korean government (MSIP), and by a grant issued for the Basic Science Research Program (NRF-R1A4A1031574 to E-TH), funded by the Ministry of Science, ICT and Future Planning.
                Categories
                Cellular and Infection Microbiology
                Original Research
                Custom metadata
                Parasite and Host

                Infectious disease & Microbiology
                malaria,plasmodium vivax,plasmodium knowlesi,mtrap,invasion,cross-species immune responses

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