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      Long-Term Rock Phosphate Fertilization Impacts the Microbial Communities of Maize Rhizosphere

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          Abstract

          Phosphate fertilization is a common practice in agriculture worldwide, and several commercial products are widely used. Triple superphosphate (TSP) is an excellent soluble phosphorus (P) source. However, its high cost of production makes the long-term use of crude rock phosphate (RP) a more attractive alternative in developing countries, albeit its influence on plant-associated microbiota remains unclear. Here, we compared long-term effects of TSP and RP fertilization on the structure of maize rhizosphere microbial community using next generation sequencing. Proteobacteria were dominant in all conditions, whereas Oxalobacteraceae (mainly Massilia and Herbaspirillum) was enriched in the RP-amended soil. Klebsiella was the second most abundant taxon in the RP-treated soil. Burkholderia sp. and Bacillus sp. were enriched in the RP-amended soil when compared to the TSP-treated soil. Regarding fungi, Glomeromycota showed highest abundance in RP-amended soils, and the main genera were Scutellospora and Racocetra. These taxa are already described as important for P solubilization/acquisition in RP-fertilized soil. Maize grown on TSP and RP-treated soil presented similar productivity, and a positive correlation was detected for P content and the microbial community of the soils. The results suggest changes of the microbial community composition associated to the type of phosphate fertilization. Whilst it is not possible to establish causality relations, our data highlights a few candidate taxa that could be involved in RP solubilization and plant growth promotion. Moreover, this can represent a shorter path for further studies aiming the isolation and validation of the taxa described here concerning P release on the soil plant system and their use as bioinoculants.

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          Pyrosequencing enumerates and contrasts soil microbial diversity.

          Estimates of the number of species of bacteria per gram of soil vary between 2000 and 8.3 million (Gans et al., 2005; Schloss and Handelsman, 2006). The highest estimate suggests that the number may be so large as to be impractical to test by amplification and sequencing of the highly conserved 16S rRNA gene from soil DNA (Gans et al., 2005). Here we present the use of high throughput DNA pyrosequencing and statistical inference to assess bacterial diversity in four soils across a large transect of the western hemisphere. The number of bacterial 16S rRNA sequences obtained from each site varied from 26,140 to 53,533. The most abundant bacterial groups in all four soils were the Bacteroidetes, Betaproteobacteria and Alphaproteobacteria. Using three estimators of diversity, the maximum number of unique sequences (operational taxonomic units roughly corresponding to the species level) never exceeded 52,000 in these soils at the lowest level of dissimilarity. Furthermore, the bacterial diversity of the forest soil was phylum rich compared to the agricultural soils, which are species rich but phylum poor. The forest site also showed far less diversity of the Archaea with only 0.009% of all sequences from that site being from this group as opposed to 4%-12% of the sequences from the three agricultural sites. This work is the most comprehensive examination to date of bacterial diversity in soil and suggests that agricultural management of soil may significantly influence the diversity of bacteria and archaea.
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            Soil microorganisms mediating phosphorus availability update on microbial phosphorus.

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              Manipulating the soil microbiome to increase soil health and plant fertility

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                11 July 2017
                2017
                : 8
                : 1266
                Affiliations
                [1] 1Microbiology Department, Universidade Federal de Minas Gerais Belo Horizonte, Brazil
                [2] 2Biosystems Informatics and Genomics Group, René Rachou Research Center, Fiocruz Belo Horizonte, Brazil
                [3] 3Microbiology Institute, Czech Academy of Sciences – CAS Prague, Czechia
                [4] 4Centro de Biotecnología de los Recursos Naturales, Facultad de Ciencias Agrarias y Forestales, Universidad Católica del Maule Talca, Chile
                [5] 5Embrapa Maize and Sorghum Sete Lagoas, Brazil
                Author notes

                Edited by: Diana Elizabeth Marco, National Scientific and Technical Research Council (CONICET), Argentina

                Reviewed by: Aymé Spor, INRA, UMR1347 Agroécologie, France; David Dowling, Institute of Technology Carlow, Ireland

                *Correspondence: Vera L. Dos Santos, verabio@ 123456gmail.com

                This article was submitted to Microbial Symbioses, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2017.01266
                5504191
                28744264
                d308eb71-bc74-4b57-93be-8f9af282cf0e
                Copyright © 2017 Silva, Medeiros, Leite, Morais, Cuadros-Orellana, Oliveira, de Paula Lana, Gomes and Dos Santos.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 27 April 2017
                : 23 June 2017
                Page count
                Figures: 4, Tables: 1, Equations: 0, References: 76, Pages: 11, Words: 0
                Funding
                Funded by: Conselho Nacional de Desenvolvimento Científico e Tecnológico 10.13039/501100003593
                Award ID: 477349/2013-7
                Funded by: Fundação de Amparo à Pesquisa do Estado de Minas Gerais 10.13039/501100004901
                Award ID: Apq-01819-13
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                microbial community,maize rhizosphere,rock phosphate
                Microbiology & Virology
                microbial community, maize rhizosphere, rock phosphate

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