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      Applying novel connectivity networks to wood turtle populations to provide comprehensive conservation management strategies for species at risk

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          Abstract

          Genetic diversity within and among populations is frequently used in prioritization processes to rank populations based on their vulnerability or distinctiveness, however, connectivity and gene flow are rarely considered within these frameworks. Using a wood turtle ( Glyptemys insculpta) population graph, we introduce BRIDES as a new tool to evaluate populations for conservation purpose without focusing solely on individual nodes. BRIDES characterizes different types of shortest paths among the nodes of a subgraph and compares the shortest paths among the same nodes in a complete network. The main objectives of this study were to (1) introduce a BRIDES selection process to assist conservation biologists in the prioritization of populations, and (2) use different centrality indices and node removal statistics to compare BRIDES results and assess gene flow among wood turtle populations. We constructed six population subgraphs and used a stepwise selection algorithm to choose the optimal number of additional nodes, representing different populations, required to maximize network connectivity under different weighting schemes. Our results demonstrate the robustness of the BRIDES selection process for a given scenario, while inconsistencies were observed among node-based metrics. Results showed repeated selection of certain wood turtle populations, which could have not been predicted following only genetic diversity and distinctiveness estimation, node-based metrics and node removal analysis. Contrary to centrality measures focusing on static networks, BRIDES allowed for the analysis of evolving networks. To our knowledge, this study is the first to apply graph theory for turtle conservation genetics. We show that population graphs can reveal complex gene flow dynamics and population resiliency to local extinction. As such, BRIDES offers an interesting complement to node-based metrics and node removal to better understand the global processes at play when addressing population prioritization frameworks.

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          The Structure and Function of Complex Networks

          M. Newman (2003)
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            Metapopulation dynamics

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              What can genetics tell us about population connectivity?

              Genetic data are often used to assess 'population connectivity' because it is difficult to measure dispersal directly at large spatial scales. Genetic connectivity, however, depends primarily on the absolute number of dispersers among populations, whereas demographic connectivity depends on the relative contributions to population growth rates of dispersal vs. local recruitment (i.e. survival and reproduction of residents). Although many questions are best answered with data on genetic connectivity, genetic data alone provide little information on demographic connectivity. The importance of demographic connectivity is clear when the elimination of immigration results in a shift from stable or positive population growth to negative population growth. Otherwise, the amount of dispersal required for demographic connectivity depends on the context (e.g. conservation or harvest management), and even high dispersal rates may not indicate demographic interdependence. Therefore, it is risky to infer the importance of demographic connectivity without information on local demographic rates and how those rates vary over time. Genetic methods can provide insight on demographic connectivity when combined with these local demographic rates, data on movement behaviour, or estimates of reproductive success of immigrants and residents. We also consider the strengths and limitations of genetic measures of connectivity and discuss three concepts of genetic connectivity that depend upon the evolutionary criteria of interest: inbreeding connectivity, drift connectivity, and adaptive connectivity. To conclude, we describe alternative approaches for assessing population connectivity, highlighting the value of combining genetic data with capture-mark-recapture methods or other direct measures of movement to elucidate the complex role of dispersal in natural populations.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: MethodologyRole: SoftwareRole: Writing – original draft
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: ResourcesRole: SupervisionRole: ValidationRole: Writing – original draft
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SoftwareRole: SupervisionRole: ValidationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                12 August 2022
                2022
                : 17
                : 8
                : e0271797
                Affiliations
                [1 ] Département de sciences biologiques, Université de Montréal, Montréal, Québec, Canada
                [2 ] Ministère des Forêts, de la Faune et des Parcs, Longueuil, Québec, Canada
                USDA Forest Service, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-7663-9498
                Article
                PONE-D-21-27615
                10.1371/journal.pone.0271797
                9374220
                35960725
                d20b4ddd-4add-464e-bacd-e8edb5a74dbe
                © 2022 Bouchard et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 25 August 2021
                : 7 July 2022
                Page count
                Figures: 4, Tables: 2, Pages: 18
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100000038, Natural Sciences and Engineering Research Council of Canada;
                Award ID: OGP0155251
                Award Recipient :
                This work was supported by a Discovery Grant from the Natural Sciences and Engineering Research Council (NSERC Canada) [OGP0155251] to François-Joseph Lapointe. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Biology and Life Sciences
                Genetics
                Population Genetics
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Biology and Life Sciences
                Conservation Biology
                Conservation Genetics
                Ecology and Environmental Sciences
                Conservation Science
                Conservation Biology
                Conservation Genetics
                Biology and Life Sciences
                Genetics
                Conservation Genetics
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Reptiles
                Testudines
                Turtles
                Biology and Life Sciences
                Zoology
                Animals
                Vertebrates
                Amniotes
                Reptiles
                Testudines
                Turtles
                Biology and Life Sciences
                Genetics
                Heredity
                Gene Flow
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Gene Flow
                Biology and Life Sciences
                Genetics
                Population Genetics
                Gene Flow
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Gene Flow
                Biology and Life Sciences
                Genetics
                Gene Identification and Analysis
                Genetic Networks
                Computer and Information Sciences
                Network Analysis
                Genetic Networks
                Computer and Information Sciences
                Network Analysis
                Biology and Life Sciences
                Conservation Biology
                Ecology and Environmental Sciences
                Conservation Science
                Conservation Biology
                Computer and Information Sciences
                Network Analysis
                Centrality
                Custom metadata
                Data Availability Statement: The R and C++ source codes are available from the Github repository ( https://github.com/etiennelord/BRIDES/) with a LGPL-3.0 License. The primary data underlying these analyses will be deposited in DRYAD.

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