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      Dengue virus exploits autophagy vesicles and secretory pathways to promote transmission by human dendritic cells

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          Abstract

          Dengue virus (DENV), transmitted by infected mosquitoes, is a major public health concern, with approximately half the world’s population at risk for infection. Recent decades have increasing incidence of dengue-associated disease alongside growing frequency of outbreaks. Although promising progress has been made in anti-DENV immunizations, post-infection treatment remains limited to non-specific supportive treatments. Development of antiviral therapeutics is thus required to limit DENV dissemination in humans and to help control the severity of outbreaks. Dendritic cells (DCs) are amongst the first cells to encounter DENV upon injection into the human skin mucosa, and thereafter promote systemic viral dissemination to additional human target cells. Autophagy is a vesicle trafficking pathway involving the formation of cytosolic autophagosomes, and recent reports have highlighted the extensive manipulation of autophagy by flaviviruses, including DENV, for viral replication. However, the temporal profiling and function of autophagy activity in DENV infection and transmission by human primary DCs remains poorly understood. Herein, we demonstrate that mechanisms of autophagosome formation and extracellular vesicle (EV) release have a pro-viral role in DC-mediated DENV transmission. We show that DENV exploits early-stage canonical autophagy to establish infection in primary human DCs. DENV replication enhanced autophagosome formation in primary human DCs, and intrinsically-heightened autophagosome biogenesis correlated with relatively higher rates of DC susceptibility to DENV. Furthermore, our data suggest that viral replication intermediates co-localize with autophagosomes, while productive DENV infection introduces a block at the late degradative stages of autophagy in infected DCs but not in uninfected bystander cells. Notably, we identify for the first time that approximately one-fourth of DC-derived CD9/CD81/CD63+ EVs co-express canonical autophagy marker LC3, and demonstrate that DC-derived EV populations are an alternative, cell-free mechanism by which DCs promote DENV transmission to additional target sites. Taken together, our study highlights intersections between autophagy and secretory pathways during viral infection, and puts forward autophagosome accumulation and viral RNA-laden EVs as host determinants of DC-mediated DENV infection in humans. Host-directed therapeutics targeting autophagy and exocytosis pathways thus have potential to enhance DC-driven resistance to DENV acquisition and thereby limit viral dissemination by initial human target cells following mosquito-to-human transmission of DENV.

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          Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).

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            p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.

            Protein degradation by basal constitutive autophagy is important to avoid accumulation of polyubiquitinated protein aggregates and development of neurodegenerative diseases. The polyubiquitin-binding protein p62/SQSTM1 is degraded by autophagy. It is found in cellular inclusion bodies together with polyubiquitinated proteins and in cytosolic protein aggregates that accumulate in various chronic, toxic, and degenerative diseases. Here we show for the first time a direct interaction between p62 and the autophagic effector proteins LC3A and -B and the related gamma-aminobutyrate receptor-associated protein and gamma-aminobutyrate receptor-associated-like proteins. The binding is mediated by a 22-residue sequence of p62 containing an evolutionarily conserved motif. To monitor the autophagic sequestration of p62- and LC3-positive bodies, we developed a novel pH-sensitive fluorescent tag consisting of a tandem fusion of the red, acid-insensitive mCherry and the acid-sensitive green fluorescent proteins. This approach revealed that p62- and LC3-positive bodies are degraded in autolysosomes. Strikingly, even rather large p62-positive inclusion bodies (2 microm diameter) become degraded by autophagy. The specific interaction between p62 and LC3, requiring the motif we have mapped, is instrumental in mediating autophagic degradation of the p62-positive bodies. We also demonstrate that the previously reported aggresome-like induced structures containing ubiquitinated proteins in cytosolic bodies are dependent on p62 for their formation. In fact, p62 bodies and these structures are indistinguishable. Taken together, our results clearly suggest that p62 is required both for the formation and the degradation of polyubiquitin-containing bodies by autophagy.
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              Isolation of Extracellular Vesicles: General Methodologies and Latest Trends

              Background Extracellular vesicles (EVs) play an essential role in the communication between cells and transport of diagnostically significant molecules. A wide diversity of approaches utilizing different biochemical properties of EVs and a lack of accepted protocols make data interpretation very challenging. Scope of Review This review consolidates the data on the classical and state-of-the-art methods for isolation of EVs, including exosomes, highlighting the advantages and disadvantages of each method. Various characteristics of individual methods, including isolation efficiency, EV yield, properties of isolated EVs, and labor consumption are compared. Major Conclusions A mixed population of vesicles is obtained in most studies of EVs for all used isolation methods. The properties of an analyzed sample should be taken into account when planning an experiment aimed at studying and using these vesicles. The problem of adequate EVs isolation methods still remains; it might not be possible to develop a universal EV isolation method but the available protocols can be used towards solving particular types of problems. General Significance With the wide use of EVs for diagnosis and therapy of various diseases the evaluation of existing methods for EV isolation is one of the key problems in modern biology and medicine.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/2364801Role: Role: Role: Role: Role: Role: Role: Role: Role:
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                Journal
                Front Immunol
                Front Immunol
                Front. Immunol.
                Frontiers in Immunology
                Frontiers Media S.A.
                1664-3224
                28 May 2024
                2024
                : 15
                : 1260439
                Affiliations
                [1] 1 Department of Experimental Immunology, Amsterdam UMC, University of Amsterdam , Amsterdam, Netherlands
                [2] 2 Amsterdam Institute for Immunology and Infectious Diseases , Amsterdam, Netherlands
                [3] 3 Amsterdam Gastroenterology Endocrinology Metabolism , Amsterdam, Netherlands
                [4] 4 Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam , Amsterdam, Netherlands
                Author notes

                Edited by: Rina Barouch-Bentov, Stanford University, United States

                Reviewed by: Suresh D. Sharma, United States Department of Health and Human Services, United States

                Scott B. Biering, University of California, San Diego, United States

                Glenn Randall, The University of Chicago, United States

                *Correspondence: Carla M. S. Ribeiro, c.m.ribeiro@ 123456amsterdamumc.nl

                †These authors have contributed equally to this work and share first authorship

                Article
                10.3389/fimmu.2024.1260439
                11165123
                38863700
                d1e3f9ec-8eee-46cf-b7de-b5d1a6ef2c16
                Copyright © 2024 Cloherty, Rader, Patel, Eisden, van Piggelen, Schreurs and Ribeiro

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 17 July 2023
                : 19 April 2024
                Page count
                Figures: 7, Tables: 1, Equations: 0, References: 92, Pages: 18, Words: 8855
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was funded by AMC PhD Scholarship and Amsterdam UMC grant (awarded to AC and CR), AMC-VUmc Alliance grant, Dutch Research Council (NWO-ZonMw) VIDI 91718331 and ASPASIA 015.014.030 grants (both awarded to CR).
                Categories
                Immunology
                Original Research
                Custom metadata
                Viral Immunology

                Immunology
                dengue virus,autophagy,extracellular vesicles,dendritic cells,secretory autophagy,viral transmission,viral evasion,host-directed antivirals

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