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      Induced Mutagenesis in UGT74S1 Gene Leads to Stable New Flax Lines with Altered Secoisolariciresinol Diglucoside (SDG) Profiles

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          Abstract

          Flax secoisolariciresinol (SECO) diglucoside (SDG) lignan is an emerging natural product purported to prevent chronic diseases in humans. SECO, the aglycone form of SDG, has shown higher intestinal cell absorption but it is not accumulated naturally in planta. Recently, we have identified and characterized a UDP-glucosyltransferase gene, UGT74S1, that glucosylates SECO into its monoglucoside (SMG) and SDG forms when expressed in yeast. However, whether this gene is unique in controlling SECO glucosylation into SDG in planta is unclear. Here, we report on the use of UGT74S1 in reverse and forward genetics to characterize an ethyl methane sulfonate (EMS) mutagenized flax population from cultivar CDC Bethune and consisting of 1996 M2 families. EMS mutagenesis generated 73 SNP variants causing 79 mutational events in the UGT74S1 exonic regions of 93 M2 families. The mutation frequency in the exonic regions was determined to be one per 28 Kb. Of these mutations, 13 homozygous missense mutations and two homozygous nonsense mutations were observed and all were transmitted into the M3 and M4 generations. Forward genetics screening of the population showed homozygous nonsense mutants completely lacking SDG biosynthesis while the production of SMG was observed only in a subset of the M4 lines. Heterozygous or homozygous M4 missense mutants displayed a wide range of SDG levels, some being greater than those of CDC Bethune. No additional deleterious mutations were detected in these mutant lines using a panel of 10 other genes potentially involved in the lignan biosynthesis. This study provides further evidence that UGT74S1 is unique in controlling SDG formation from SECO and this is the first report of non-transgenic flax germplasm with simultaneous knockout of SDG and presence of SMG in planta.

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          Plant secondary metabolism glycosyltransferases: the emerging functional analysis.

          Glycosylation is a widespread modification of plant secondary metabolites. It is involved in various functions, including the regulation of hormone homeostasis, the detoxification of xenobiotics and the biosynthesis and storage of secondary compounds. In plants, these reactions are controlled by a specific subclass of the ubiquitous glycosyltransferase family. Although these enzymes have been studied intensively for many years, to date only a handful have been characterized in planta. Plant genome projects have uncovered unsuspected complexity within this family that is hindering the characterization of single genes. However, genome information also paves the way for the development of functional genomic approaches. Here, we highlight recent progress and the outcomes of novel strategies developed to uncover the physiological roles of these glycosyltransferases.
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            Discovery of chemically induced mutations in rice by TILLING

            Background Rice is both a food source for a majority of the world's population and an important model system. Available functional genomics resources include targeted insertion mutagenesis and transgenic tools. While these can be powerful, a non-transgenic, unbiased targeted mutagenesis method that can generate a range of allele types would add considerably to the analysis of the rice genome. TILLING (Targeting Induced Local Lesions in Genomes), a general reverse genetic technique that combines traditional mutagenesis with high throughput methods for mutation discovery, is such a method. Results To apply TILLING to rice, we developed two mutagenized rice populations. One population was developed by treatment with the chemical mutagen ethyl methanesulphonate (EMS), and the other with a combination of sodium azide plus methyl-nitrosourea (Az-MNU). To find induced mutations, target regions of 0.7–1.5 kilobases were PCR amplified using gene specific primers labeled with fluorescent dyes. Heteroduplexes were formed through denaturation and annealing of PCR products, mismatches digested with a crude preparation of CEL I nuclease and cleaved fragments visualized using denaturing polyacrylamide gel electrophoresis. In 10 target genes screened, we identified 27 nucleotide changes in the EMS-treated population and 30 in the Az-MNU population. Conclusion We estimate that the density of induced mutations is two- to threefold higher than previously reported rice populations (about 1/300 kb). By comparison to other plants used in public TILLING services, we conclude that the populations described here would be suitable for use in a large scale TILLING project.
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              Targeting induced local lesions IN genomes (TILLING) for plant functional genomics.

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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                21 September 2017
                2017
                : 8
                : 1638
                Affiliations
                [1] 1Charlottetown Research and Development Centre, Agriculture and Agri-Food Canada Charlottetown, PE, Canada
                [2] 2Department of Biology, University of British Columbia Kelowna, BC, Canada
                [3] 3Department of Plant Science, Crop Development Centre, University of Saskatchewan Saskatoon, SK, Canada
                [4] 4Ottawa Research and Development Centre, Agriculture and Agri-Food Canada Ottawa, ON, Canada
                Author notes

                Edited by: José Manuel Pérez-Pérez, Universidad Miguel Hernández de Elche, Spain

                Reviewed by: Ravi Maruthachalam, Indian Institute of Science Education and Research, Thiruvananthapuram, India; Christopher Cullis, Case Western Reserve University, United States

                *Correspondence: Bourlaye Fofana bourlaye.fofana@ 123456agr.gc.ca

                This article was submitted to Plant Genetics and Genomics, a section of the journal Frontiers in Plant Science

                †Present Address: Kaushik Ghose, Department of Plant and Soil Science, Texas Tech University, Lubbock, TX, United States

                Article
                10.3389/fpls.2017.01638
                5613138
                d103eabb-7354-4f7d-8468-0ecc048de7f3
                Copyright © 2017 Fofana, Ghose, Somalraju, McCallum, Main, Deyholos, Rowland and Cloutier.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 May 2017
                : 06 September 2017
                Page count
                Figures: 6, Tables: 5, Equations: 0, References: 67, Pages: 16, Words: 12026
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                flax,lignan,ugt74s1,ems,snps,secoisolariciresinol,reverse genetics,forward genetics
                Plant science & Botany
                flax, lignan, ugt74s1, ems, snps, secoisolariciresinol, reverse genetics, forward genetics

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