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      ABCG1 contributes to suberin formation in Arabidopsis thaliana roots

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          Abstract

          Diffusion barriers enable plant survival under fluctuating environmental conditions. They control internal water potential and protect against biotic or abiotic stress factors. How these protective molecules are deposited to the extracellular environment is poorly understood. We here examined the role of the Arabidopsis ABC half-size transporter AtABCG1 in the formation of the extracellular root suberin layer. Quantitative analysis of extracellular long-chain fatty acids and aliphatic alcohols in the atabcg1 mutants demonstrated altered root suberin composition, specifically a reduction in longer chain dicarboxylic acids, fatty alcohols and acids. Accordingly, the ATP-hydrolyzing activity of heterologous expressed and purified AtABCG1 was strongly stimulated by fatty alcohols (C 26–C 30) and fatty acids (C 24–C 30) in a chain length dependent manner. These results are a first indication for the function of AtABCG1 in the transport of longer chain aliphatic monomers from the cytoplasm to the apoplastic space during root suberin formation.

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          Building lipid barriers: biosynthesis of cutin and suberin.

          Cutin and suberin are the polymer matrices for lipophilic cell wall barriers. These barriers control the fluxes of gases, water and solutes, and also play roles in protecting plants from biotic and abiotic stresses and in controlling plant morphology. Although they are ubiquitous, cutin and suberin are the least understood of the major plant extracellular polymers. The use of forward and reverse genetic approaches in Arabidopsis has led to the identification of oxidoreductase and acyltransferase genes involved in the biosynthesis of these polymers. However, major questions about the underlying polymer structure, biochemistry, and intracellular versus extracellular assembly remain to be resolved. The analysis of plant lines with modified cutins and suberins has begun to reveal the inter-relationships between the composition and function of these polymers.
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            Q-Gene: processing quantitative real-time RT-PCR data.

            Q-Gene is an application for the processing of quantitative real-time RT-PCR data. It offers the user the possibility to freely choose between two principally different procedures to calculate normalized gene expressions as either means of Normalized Expressions or Mean Normalized Expressions. In this contribution it will be shown that the calculation of Mean Normalized Expressions has to be used for processing simplex PCR data, while multiplex PCR data should preferably be processed by calculating Normalized Expressions. The two procedures, which are currently in widespread use and regarded as more or less equivalent alternatives, should therefore specifically be applied according to the quantification procedure used. Web access to this program is provided at http://www.biotechniques.com/softlib/qgene.html
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              Plant ABC proteins--a unified nomenclature and updated inventory.

              The ABC superfamily comprises both membrane-bound transporters and soluble proteins involved in a broad range of processes, many of which are of considerable agricultural, biotechnological and medical potential. Completion of the Arabidopsis and rice genome sequences has revealed a particularly large and diverse complement of plant ABC proteins in comparison with other organisms. Forward and reverse genetics, together with heterologous expression, have uncovered many novel roles for plant ABC proteins, but this progress has been accompanied by a confusing proliferation of names for plant ABC genes and their products. A consolidated nomenclature will provide much-needed clarity and a framework for future research.
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                Author and article information

                Contributors
                lutz.schmitt@hhu.de
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                6 August 2019
                6 August 2019
                2019
                : 9
                : 11381
                Affiliations
                [1 ]ISNI 0000 0001 2176 9917, GRID grid.411327.2, Institute of Biochemistry, , Heinrich-Heine University, ; Düsseldorf, Germany
                [2 ]ISNI 0000 0001 2176 9917, GRID grid.411327.2, Institute of Plant Biochemistry, , Heinrich-Heine University, ; Düsseldorf, Germany
                [3 ]ISNI 0000 0001 2176 9917, GRID grid.411327.2, Institute for Molecular Ecophysiology of Plants, , Heinrich-Heine University, ; Düsseldorf, Germany
                [4 ]ISNI 0000 0001 2176 9917, GRID grid.411327.2, Cluster of Excellence on Plant Sciences (CEPLAS), , Heinrich-Heine University, ; Düsseldorf, Germany
                Author information
                http://orcid.org/0000-0002-1167-9819
                Article
                47916
                10.1038/s41598-019-47916-9
                6684660
                31388073
                d0c67921-2158-447f-86ec-4ba6414bff10
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 April 2019
                : 26 July 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001659, Deutsche Forschungsgemeinschaft (German Research Foundation);
                Award ID: EXC 1028
                Award ID: CRC 1208
                Award Recipient :
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                © The Author(s) 2019

                Uncategorized
                plant sciences,biochemistry
                Uncategorized
                plant sciences, biochemistry

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