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      Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology

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          Abstract

          In this paper, we develop a knowledge graph-based framework for the automated calibration of combustion reaction mechanisms and demonstrate its effectiveness on a case study of poly(oxymethylene)dimethyl ether (PODE n , where n = 3) oxidation. We develop an ontological representation for combustion experiments, OntoChemExp, that allows for the semantic enrichment of experiments within the J-Park simulator (JPS, theworldavatar.com), an existing cross-domain knowledge graph. OntoChemExp is fully capable of supporting experimental results in the Process Informatics Model (PrIMe) database. Following this, a set of software agents are developed to perform experimental result retrieval, sensitivity analysis, and calibration tasks. The sensitivity analysis agent is used for both generic sensitivity analyses and reaction selection for subsequent calibration. The calibration process is performed as a sampling task, followed by an optimization task. The agents are designed for use with generic models but are demonstrated with ignition delay time and laminar flame speed simulations. We find that calibration times are reduced, while accuracy is increased compared to manual calibration, achieving a 79% decrease in the objective function value, as defined in this study. Further, we demonstrate how this workflow is implemented as an extension of the JPS.

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          Most cited references53

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          DBpedia – A large-scale, multilingual knowledge base extracted from Wikipedia

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            Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms

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              `` Direct Search'' Solution of Numerical and Statistical Problems

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                Author and article information

                Journal
                J Chem Inf Model
                J Chem Inf Model
                ci
                jcisd8
                Journal of Chemical Information and Modeling
                American Chemical Society
                1549-9596
                1549-960X
                07 April 2021
                26 April 2021
                : 61
                : 4
                : 1701-1717
                Affiliations
                []Department of Chemical Engineering and Biotechnology, University of Cambridge , Philippa Fawcett Drive, Cambridge CB3 0AS, U.K
                []Department of Computer Science and Technology, University of Cambridge , 15 JJ Thomson Avenue, Cambridge CB3 0FD, U.K.
                [§ ]Cambridge Centre for Advanced Research and Education in Singapore (CARES) , CREATE Tower #05-05, 1 Create Way, Singapore 138602, Singapore
                []School of Chemical and Biomedical Engineering, Nanyang Technological University , 62 Nanyang Drive, Singapore 637459, Singapore
                Author notes
                [* ]Email: mk306@ 123456cam.ac.uk . Phone: +44 (0)1223 762784.
                Author information
                http://orcid.org/0000-0002-1246-1993
                http://orcid.org/0000-0003-4766-8588
                http://orcid.org/0000-0002-6786-7309
                http://orcid.org/0000-0001-7018-9433
                http://orcid.org/0000-0002-2143-8656
                http://orcid.org/0000-0003-4101-4874
                http://orcid.org/0000-0002-4293-8924
                Article
                10.1021/acs.jcim.0c01322
                8154252
                33825473
                cf950ca8-12db-4537-bf7f-27bc96af1765
                © 2021 American Chemical Society

                Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 13 November 2020
                Funding
                Funded by: Alexander von Humboldt-Stiftung, doi 10.13039/100005156;
                Award ID: NA
                Funded by: Gates Cambridge Trust, doi 10.13039/501100005370;
                Award ID: OPP1144
                Funded by: China Scholarship Council, doi 10.13039/501100004543;
                Award ID: NA
                Funded by: Cambridge Commonwealth, European and International Trust, doi 10.13039/501100003343;
                Award ID: NA
                Funded by: National Research Foundation Singapore, doi 10.13039/501100001381;
                Award ID: NA
                Funded by: Engineering and Physical Sciences Research Council, doi 10.13039/501100000266;
                Award ID: EP/S024220/1
                Funded by: Engineering and Physical Sciences Research Council, doi 10.13039/501100000266;
                Award ID: EP/R029369/1
                Categories
                Article
                Custom metadata
                ci0c01322
                ci0c01322

                Computational chemistry & Modeling
                Computational chemistry & Modeling

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