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      A barley stripe mosaic virus‐based guide RNA delivery system for targeted mutagenesis in wheat and maize

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          Summary

          Plant RNA virus‐based guide RNA (gRNA) delivery has substantial advantages compared to that of the conventional constitutive promoter‐driven expression due to the rapid and robust amplification of gRNAs during virus replication and movement. To date, virus‐induced genome editing tools have not been developed for wheat and maize. In this study, we engineered a barley stripe mosaic virus (BSMV)‐based gRNA delivery system for clustered regularly interspaced short palindromic repeat (CRISPR)/Cas9‐mediated targeted mutagenesis in wheat and maize. BSMV‐based delivery of single gRNAs for targeted mutagenesis was first validated in Nicotiana benthamiana. To extend this work, we transformed wheat and maize with the Cas9 nuclease gene and selected the wheat TaGASR7 and maize ZmTMS5 genes as targets to assess the feasibility and efficiency of BSMV‐mediated mutagenesis. Positive targeted mutagenesis of the TaGASR7 and ZmTMS5 genes was achieved for wheat and maize with efficiencies of up to 78% and 48%. Our results provide a useful tool for fast and efficient delivery of gRNAs into economically important crops.

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          Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

          Editing plant genomes is technically challenging in hard-to-transform plants and usually involves transgenic intermediates, which causes regulatory concerns. Here we report two simple and efficient genome-editing methods in which plants are regenerated from callus cells transiently expressing CRISPR/Cas9 introduced as DNA or RNA. This transient expression-based genome-editing system is highly efficient and specific for producing transgene-free and homozygous wheat mutants in the T0 generation. We demonstrate our protocol to edit genes in hexaploid bread wheat and tetraploid durum wheat, and show that we are able to generate mutants with no detectable transgenes. Our methods may be applicable to other plant species, thus offering the potential to accelerate basic and applied plant genome-engineering research.
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            Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

            Substantial efforts are being made to optimize the CRISPR/Cas9 system for precision crop breeding. The avoidance of transgene integration and reduction of off-target mutations are the most important targets for optimization. Here, we describe an efficient genome editing method for bread wheat using CRISPR/Cas9 ribonucleoproteins (RNPs). Starting from RNP preparation, the whole protocol takes only seven to nine weeks, with four to five independent mutants produced from 100 immature wheat embryos. Deep sequencing reveals that the chance of off-target mutations in wheat cells is much lower in RNP mediated genome editing than in editing with CRISPR/Cas9 DNA. Consistent with this finding, no off-target mutations are detected in the mutant plants. Because no foreign DNA is used in CRISPR/Cas9 RNP mediated genome editing, the mutants obtained are completely transgene free. This method may be widely applicable for producing genome edited crop plants and has a good prospect of being commercialized.
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              Genome editing in rice and wheat using the CRISPR/Cas system.

              Targeted genome editing nucleases, such as zinc-finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs), are powerful tools for understanding gene function and for developing valuable new traits in plants. The clustered regularly interspersed short palindromic repeats (CRISPR)/Cas system has recently emerged as an alternative nuclease-based method for efficient and versatile genome engineering. In this system, only the 20-nt targeting sequence within the single-guide RNA (sgRNA) needs to be changed to target different genes. The simplicity of the cloning strategy and the few limitations on potential target sites make the CRISPR/Cas system very appealing. Here we describe a stepwise protocol for the selection of target sites, as well as the design, construction, verification and use of sgRNAs for sequence-specific CRISPR/Cas-mediated mutagenesis and gene targeting in rice and wheat. The CRISPR/Cas system provides a straightforward method for rapid gene targeting within 1-2 weeks in protoplasts, and mutated rice plants can be generated within 13-17 weeks.
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                Author and article information

                Contributors
                cauzhangyl@cau.edu.cn
                Journal
                Mol Plant Pathol
                Mol. Plant Pathol
                10.1111/(ISSN)1364-3703
                MPP
                Molecular Plant Pathology
                John Wiley and Sons Inc. (Hoboken )
                1464-6722
                1364-3703
                05 July 2019
                October 2019
                : 20
                : 10 ( doiID: 10.1111/mpp.v20.10 )
                : 1463-1474
                Affiliations
                [ 1 ] State Key Laboratory of Agro‐Biotechnology and Ministry of Agriculture Key Laboratory of Soil Microbiology, College of Biological Sciences China Agricultural University Beijing 100193 China
                [ 2 ] Institute of Crop Sciences Chinese Academy of Agricultural Sciences Beijing 100081 China
                [ 3 ] State Key Laboratory of Agrobiotechnology and National Maize Improvement Center, Department of Plant Genetics and Breeding China Agricultural University Beijing 100193 China
                Author notes
                [*] [* ] Correspondence: Email: cauzhangyl@ 123456cau.edu.cn

                Author information
                https://orcid.org/0000-0003-4133-1263
                https://orcid.org/0000-0002-6790-1044
                Article
                MPP12849
                10.1111/mpp.12849
                6792137
                31273916
                cdcd5c88-a1ec-4197-90c2-a154a773efb6
                © 2019 The Authors. Molecular Plant Pathology published by British Society for Plant Pathology and John Wiley & Sons Ltd

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 4, Tables: 0, Pages: 12, Words: 16588
                Funding
                Funded by: National Key R & D Program of China
                Award ID: 2016YFD0100502
                Funded by: The Project for Extramural Scientists of SKLAB
                Award ID: 2019SKLAB1-14
                Funded by: Transgenic Research Program of China
                Award ID: 2016ZX08010-001
                Categories
                Technical Advance
                Technical Advances
                Custom metadata
                2.0
                mpp12849
                October 2019
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.7.0 mode:remove_FC converted:15.10.2019

                Plant science & Botany
                barley stripe mosaic virus,crispr mutagenesis,delivery,grna,maize,nicotiana benthamiana,targeted mutagenesis,wheat

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