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      High resolution DNA barcode library for European butterflies reveals continental patterns of mitochondrial genetic diversity

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          Abstract

          The study of global biodiversity will greatly benefit from access to comprehensive DNA barcode libraries at continental scale, but such datasets are still very rare. Here, we assemble the first high-resolution reference library for European butterflies that provides 97% taxon coverage (459 species) and 22,306 COI sequences. We estimate that we captured 62% of the total haplotype diversity and show that most species possess a few very common haplotypes and many rare ones. Specimens in the dataset have an average 95.3% probability of being correctly identified. Mitochondrial diversity displayed elevated haplotype richness in southern European refugia, establishing the generality of this key biogeographic pattern for an entire taxonomic group. Fifteen percent of the species are involved in barcode sharing, but two thirds of these cases may reflect the need for further taxonomic research. This dataset provides a unique resource for conservation and for studying evolutionary processes, cryptic species, phylogeography, and ecology.

          Abstract

          Vlad Dincă, Leonardo Dapporto, and colleagues provide a continental-scale DNA barcode library for 97% of the 473 European butterfly species and examine patterns of haplotype diversity. Results of mitochondrial diversity show elevated haplotype richness in southern European refugia, and this dataset provides a valuable resource for specimen identification, conservation, and research.

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          Biological identifications through DNA barcodes.

          Although much biological research depends upon species diagnoses, taxonomic expertise is collapsing. We are convinced that the sole prospect for a sustainable identification capability lies in the construction of systems that employ DNA sequences as taxon 'barcodes'. We establish that the mitochondrial gene cytochrome c oxidase I (COI) can serve as the core of a global bioidentification system for animals. First, we demonstrate that COI profiles, derived from the low-density sampling of higher taxonomic categories, ordinarily assign newly analysed taxa to the appropriate phylum or order. Second, we demonstrate that species-level assignments can be obtained by creating comprehensive COI profiles. A model COI profile, based upon the analysis of a single individual from each of 200 closely allied species of lepidopterans, was 100% successful in correctly identifying subsequent specimens. When fully developed, a COI identification system will provide a reliable, cost-effective and accessible solution to the current problem of species identification. Its assembly will also generate important new insights into the diversification of life and the rules of molecular evolution.
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            Cryptic species as a window on diversity and conservation.

            The taxonomic challenge posed by cryptic species (two or more distinct species classified as a single species) has been recognized for nearly 300 years, but the advent of relatively inexpensive and rapid DNA sequencing has given biologists a new tool for detecting and differentiating morphologically similar species. Here, we synthesize the literature on cryptic and sibling species and discuss trends in their discovery. However, a lack of systematic studies leaves many questions open, such as whether cryptic species are more common in particular habitats, latitudes or taxonomic groups. The discovery of cryptic species is likely to be non-random with regard to taxon and biome and, hence, could have profound implications for evolutionary theory, biogeography and conservation planning.
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              Wolbachia: master manipulators of invertebrate biology.

              Wolbachia are common intracellular bacteria that are found in arthropods and nematodes. These alphaproteobacteria endosymbionts are transmitted vertically through host eggs and alter host biology in diverse ways, including the induction of reproductive manipulations, such as feminization, parthenogenesis, male killing and sperm-egg incompatibility. They can also move horizontally across species boundaries, resulting in a widespread and global distribution in diverse invertebrate hosts. Here, we review the basic biology of Wolbachia, with emphasis on recent advances in our understanding of these fascinating endosymbionts.
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                Author and article information

                Contributors
                vlad.e.dinca@gmail.com
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                9 March 2021
                9 March 2021
                2021
                : 4
                : 315
                Affiliations
                [1 ]GRID grid.10858.34, ISNI 0000 0001 0941 4873, Ecology and Genetics Research Unit, PO Box 3000, , University of Oulu, ; 90014 Oulu, Finland
                [2 ]GRID grid.5612.0, ISNI 0000 0001 2172 2676, Institut de Biologia Evolutiva (CSIC-UPF), ; 03008 Barcelona, Spain
                [3 ]GRID grid.8404.8, ISNI 0000 0004 1757 2304, ZEN lab, Dipartimento di Biologia, , University of Florence, ; 50019 Sesto Fiorentino, Italy
                [4 ]GRID grid.7737.4, ISNI 0000 0004 0410 2071, Organismal and Evolutionary Biology Research Programme, , University of Helsinki, ; FI-00014 Helsinki, Finland
                [5 ]Via Barge 3, 10139 Torino, Italy
                [6 ]VVE Workgroup Butterflies, Diamantstraat 4, 8900 Ieper, Belgium
                [7 ]Barrett’s Close, Stonesfield, Oxon, OX29 8PW UK
                [8 ]GRID grid.452688.5, ISNI 0000 0001 0727 7852, Naturwissenschaftliche Sammlungen, Sammlungs- und Forschungszentrum, Tiroler Landesmuseen, ; 6060 Hall in Tirol, Austria
                [9 ]GRID grid.34429.38, ISNI 0000 0004 1936 8198, Centre for Biodiversity Genomics, , University of Guelph, ; Guelph, ON N1G 2W1 Canada
                Author information
                http://orcid.org/0000-0003-1791-2148
                http://orcid.org/0000-0001-7129-4526
                http://orcid.org/0000-0002-2447-4388
                Article
                1834
                10.1038/s42003-021-01834-7
                7943782
                33750912
                cdb30ef1-c143-405a-beed-680d194b05a1
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 March 2020
                : 11 February 2021
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                © The Author(s) 2021

                dna sequencing,entomology,genetics,scientific community
                dna sequencing, entomology, genetics, scientific community

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