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      Modeling and Optimizing in vitro Sterilization of Chrysanthemum via Multilayer Perceptron-Non-dominated Sorting Genetic Algorithm-II (MLP-NSGAII)

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          Abstract

          In vitro sterilization is a primary step of plant tissue culture which the ultimate results of in vitro culture are directly depended on the efficiency of the sterilization. Artificial intelligence models in a combination of optimization algorithms could be beneficial computational approaches for modeling and optimizing in vitro culture. The aim of this study was modeling and optimizing in vitro sterilization of chrysanthemum, as a case study, through Multilayer Perceptron- Non-dominated Sorting Genetic Algorithm-II (MLP-NSGAII). MLP was used for modeling two outputs including contamination frequency (CF), and explant viability (EV) based on seven variables including HgCl 2, Ca(ClO) 2, Nano-silver, H 2O 2, NaOCl, AgNO 3, and immersion times. Subsequently, models were linked to NSGAII for optimizing the process, and the importance of each input was evaluated by sensitivity analysis. Results showed all of the R 2 of training and testing data were over 94%. According to MLP-NSGAII, optimal CF (0%), and EV (99.98%) can be obtained from 1.62% NaOCl at 13.96 min immersion time. The results of sensitivity analysis showed that CF and EV were more sensitive to immersion time and less sensitive to AgNO 3. Subsequently, the performance of predicted and optimized sterilants × immersion times combination were tested, and results indicated that the differences between the MLP predicted and validation data were negligible. Generally, MLP-NSGAII as a powerful methodology may pave the way for establishing new computational strategies in plant tissue culture.

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          Most cited references60

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          Multilayer feedforward networks are universal approximators

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            Nanomaterials in plant tissue culture: the disclosed and undisclosed

            Nanomaterial integration into tissue culture for prospective uninterrupted progressive plant tissue culture. Plant tissue cultures are the core of plant biology, which is important for conservation, mass propagation, genetic manipulation, bioactive compound production and plant improvement. In recent years, the application of nanoparticles (NPs) has successfully led to the elimination of microbial contaminants from explants and demonstrated the positive role of NPs in callus induction, organogenesis, somatic embryogenesis, somaclonal variation, genetic transformation and secondary metabolite production. This review aims to consolidate all of the current achievements made through the integration of nanotechnology into plant tissue culture and highlight the positive attributes of using NPs in plant tissue culture. Both the positive and adverse effects of using NPs in the culture medium are discussed and presented. The toxicity aspects and the safety concerns of exposing plants and the associated environment to NPs are recorded. Finally, future prospects through the involvement of not merely Ag, TiO 2 , and ZnO NPs, but more recent innovations such as graphene, carbon nanotubes, SiO 2 , quantum dots, and dendrimers are proposed. The undisclosed shadows hanging in the background, including the repercussions of using nanomaterials without proper awareness, as well as dosage-based adverse effects and nanotoxicity aspects, are highlighted. The need for more research in the pursuit of discrete answers to unresolved questions regarding mechanisms is emphasized as the key to real progress in plant nanobiotechnology.
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              Chrysanthemum: advances in tissue culture, cryopreservation, postharvest technology, genetics and transgenic biotechnology.

              Members of the Chrysanthemum-complex include important floricultural (cut-flower) and ornamental (pot and garden) crops, as well as plants of culinary, medicinal and (ethno)pharmacological interest. The last 35 years have seen a tremendous emphasis on their in vitro tissue culture and micropropagation, while the latter 10-15 years has seen a surge in transformation experiments, all aimed at ameliorating aesthetic and growth characteristics of the plants. This review highlights all available literature that exists on ornamental Chrysanthemum in vitro cell, tissue and organ culture, micropropagation and transformation.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                14 March 2019
                2019
                : 10
                : 282
                Affiliations
                [1] 1Department of Horticultural Science, Faculty of Agriculture, University of Tehran , Karaj, Iran
                [2] 2Department of Plant Biotechnology, Faculty of Life Science and Biotechnology, Shahid Beheshti University , Tehran, Iran
                Author notes

                Edited by: Juan Caballero, Universidad Autónoma de Querétaro, Mexico

                Reviewed by: Xiangtao Li, Northeast Normal University, China; Paweł Ramos, Medical University of Silesia, Poland

                *Correspondence: Roohangiz Naderi rnaderi@ 123456ut.ac.ir

                This article was submitted to Bioinformatics and Computational Biology, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2019.00282
                6426794
                30923529
                cbb2f1f4-5cce-46b5-9aea-d9e8c9b591db
                Copyright © 2019 Hesami, Naderi and Tohidfar.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 24 December 2018
                : 20 February 2019
                Page count
                Figures: 4, Tables: 10, Equations: 5, References: 63, Pages: 13, Words: 9217
                Categories
                Plant Science
                Methods

                Plant science & Botany
                artificial intelligence,data-driven model,in vitro culture,optimization algorithm,sensitivity analysis

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