13
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      MicroRNA‐582‐5p targeting Creb1 modulates apoptosis in cardiomyocytes hypoxia/reperfusion‐induced injury

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Background

          Myocardial ischemia–reperfusion injury (MIRI) caused by the reperfusion therapy of myocardial ischemic diseases is a kind of major disease that threatens human health and lives severely. There are lacking of effective therapeutic measures for MIRI. MicroRNAs (miRNAs) are abundant in mammalian species and play a critical role in the initiation, promotion, and progression of MIRI. However, the biological role and molecular mechanism of miRNAs in MIRI are not entirely clear.

          Methods

          We used bioinformatics analysis to uncover the significantly different miRNA by analyzing transcriptome sequencing data from myocardial tissue in the mouse MIRI model. Multiple miRNA‐related databases, including miRdb, PicTar, and TargetScan were used to forecast the downstream target genes of the differentially expressed miRNA. Then, the experimental models, including male C57BL/6J mice and HL‐1 cell line, were used for subsequent experiments including quantitative real‐time polymerase chain reaction analysis, western blot analysis, hematoxylin and eosin staining, flow cytometry, luciferase assay, gene interference, and overexpression.

          Results

          MiR‐582‐5p was found to be differentially upregulated from the transcriptome sequencing data. The elevated levels of miR‐582‐5p were verified in MIRI mice and hypoxia/reperfusion (H/R)‐induced HL‐1 cells. Functional experiments revealed that miR‐582‐5p promoted apoptosis of H/R‐induced HL‐1 cells via downregulating cAMP‐response element‐binding protein 1 (Creb1). The inhibiting action of miR‐582‐5p inhibitor on H/R‐induced apoptosis was partially reversed after Creb1 interference.

          Conclusions

          Collectively, the research findings reported that upregulation of miR‐582‐5p promoted H/R‐induced cardiomyocyte apoptosis by inhibiting Creb1. The potential diagnostic and therapeutic strategies targeting miR‐582‐5p and Creb1 could be beneficial for the MIRI treatment.

          Abstract

          We used bioinformatics analysis to find significantly different microRNA (miRNA) by analyzing transcriptome sequencing data from myocardial tissue in the mouse myocardial ischemia–reperfusion injury (MIRI) model. Multiple miRNA‐related databases (miRdb, PicTar, and TargetScan) were used to predict the downstream target genes of miRNA. Finally, we demonstrated that upregulation of miR‐582‐5p promotes apoptosis induced by hypoxia/reperfusion (H/R) in HL‐1 cells by inhibiting cAMP‐response element‐binding protein 1 (Creb1). Therapeutic strategies that target miR‐582‐5p and Creb1 could be beneficial for the treatment of ischemia/reperfusion injury after acute myocardial infarction.

          Related collections

          Most cited references70

          • Record: found
          • Abstract: found
          • Article: not found

          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: found
            Is Open Access

            miRDB: an online database for prediction of functional microRNA targets

            Abstract MicroRNAs (miRNAs) are small noncoding RNAs that act as master regulators in many biological processes. miRNAs function mainly by downregulating the expression of their gene targets. Thus, accurate prediction of miRNA targets is critical for characterization of miRNA functions. To this end, we have developed an online database, miRDB, for miRNA target prediction and functional annotations. Recently, we have performed major updates for miRDB. Specifically, by employing an improved algorithm for miRNA target prediction, we now present updated transcriptome-wide target prediction data in miRDB, including 3.5 million predicted targets regulated by 7000 miRNAs in five species. Further, we have implemented the new prediction algorithm into a web server, allowing custom target prediction with user-provided sequences. Another new database feature is the prediction of cell-specific miRNA targets. miRDB now hosts the expression profiles of over 1000 cell lines and presents target prediction data that are tailored for specific cell models. At last, a new web query interface has been added to miRDB for prediction of miRNA functions by integrative analysis of target prediction and Gene Ontology data. All data in miRDB are freely accessible at http://mirdb.org.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Regulation of microRNA biogenesis.

              Minju Ha, V Kim (2014)
              MicroRNAs (miRNAs) are small non-coding RNAs that function as guide molecules in RNA silencing. Targeting most protein-coding transcripts, miRNAs are involved in nearly all developmental and pathological processes in animals. The biogenesis of miRNAs is under tight temporal and spatial control, and their dysregulation is associated with many human diseases, particularly cancer. In animals, miRNAs are ∼22 nucleotides in length, and they are produced by two RNase III proteins--Drosha and Dicer. miRNA biogenesis is regulated at multiple levels, including at the level of miRNA transcription; its processing by Drosha and Dicer in the nucleus and cytoplasm, respectively; its modification by RNA editing, RNA methylation, uridylation and adenylation; Argonaute loading; and RNA decay. Non-canonical pathways for miRNA biogenesis, including those that are independent of Drosha or Dicer, are also emerging.
                Bookmark

                Author and article information

                Contributors
                49976790@qq.com
                Journal
                Immun Inflamm Dis
                Immun Inflamm Dis
                10.1002/(ISSN)2050-4527
                IID3
                Immunity, Inflammation and Disease
                John Wiley and Sons Inc. (Hoboken )
                2050-4527
                11 October 2022
                November 2022
                : 10
                : 11 ( doiID: 10.1002/iid3.v10.11 )
                : e708
                Affiliations
                [ 1 ] Department of Cardiac Surgery Kunming Medical University First Affiliated Hospital Kunming Yunnan China
                [ 2 ] Department of Animal Zoology Kunming Medical University Kunming Yunnan China
                [ 3 ] Department of Cardiology Kunming Medical University First Affiliated Hospital Kunming Yunnan China
                [ 4 ] Department of Anesthesiology Kunming Medical University First Affiliated Hospital Kunming Yunnan China
                [ 5 ] Department of Cardiovascular Surgery, Beijing Anzhen Hospital, Beijing Institute of Heart, Lung and Blood Vessel Diseases Capital Medical University Beijing China
                Author notes
                [*] [* ] Correspondence Xiang‐Feng Bai, Department of Cardiac Surgery, Kunming Medical University First Affiliated Hospital, Kunming, Yunnan 650032, China.

                Email: 49976790@ 123456qq.com

                Author information
                http://orcid.org/0000-0001-8483-7112
                Article
                IID3708
                10.1002/iid3.708
                9601879
                36301033
                cad474dc-521b-49f1-9f5f-b670774ec8de
                © 2022 The Authors. Immunity, Inflammation and Disease published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 10 August 2022
                : 25 May 2022
                : 30 August 2022
                Page count
                Figures: 5, Tables: 0, Pages: 13, Words: 6493
                Funding
                Funded by: Yunnan Provincial Clinical Medical Center of Cardio‐cerebral Vascular Diseases
                Award ID: ZX2019‐03‐01
                Funded by: Yunnan Province Education Department
                Award ID: 2021J0230
                Funded by: Science and Technology Planning Project of Science and Technology Department of Yunnan Province
                Award ID: 202201AY070001‐056
                Funded by: Yunnan Province Science and Technology Department
                Award ID: 2019FE001[‐045]
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                November 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.2.0 mode:remove_FC converted:26.10.2022

                apoptosis,creb1,mir‐582‐5p,myocardial ischemia–reperfusion injury

                Comments

                Comment on this article