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      Phenotypic and molecular spectrum of pyridoxamine‐5′‐phosphate oxidase deficiency: A scoping review of 87 cases of pyridoxamine‐5′‐phosphate oxidase deficiency

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          Abstract

          Pyridoxamine‐5′‐phosphate oxidase (PNPO) deficiency is an autosomal recessive pyridoxal 5′‐phosphate (PLP)‐vitamin‐responsive epileptic encephalopathy. The emerging feature of PNPO deficiency is the occurrence of refractory seizures in the first year of life. Pre‐maturity and fetal distress, combined with neonatal seizures, are other associated key characteristics. The phenotype results from a dependency of PLP which regulates several enzymes in the body. We present the phenotypic and genotypic spectrum of (PNPO) deficiency based on a literature review (2002‐2020) of reports (n = 33) of patients with confirmed PNPO deficiency (n = 87). All patients who received PLP (n = 36) showed a clinical response, with a complete dramatic PLP response with seizure cessation observed in 61% of patients. In spite of effective seizure control with PLP, approximately 56% of patients affected with PLP‐dependent epilepsy suffer developmental delay/intellectual disability. There is no diagnostic biomarker, and molecular testing required for diagnosis. However, we noted that cerebrospinal fluid (CSF) PLP was low in 81%, CSF glycine was high in 80% and urinary vanillactic acid was high in 91% of the cases. We observed only a weak correlation between the severity of PNPO protein disruption and disease outcomes, indicating the importance of other factors, including seizure onset and time of therapy initiation. We found that pre‐maturity, the delay in initiation of PLP therapy and early onset of seizures correlate with a poor neurocognitive outcome. Given the amenability of PNPO to PLP therapy for seizure control, early diagnosis is essential.

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          The ENZYME database is a repository of information related to the nomenclature of enzymes. In recent years it has became an indispensable resource for the development of metabolic databases. The current version contains information on 3705 enzymes. It is available through the ExPASy WWW server (http://www.expasy.ch/enzyme/ ).
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            Entrez Gene: gene-centered information at NCBI

            Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene) is NCBI's database for gene-specific information. It does not include all known or predicted genes; instead Entrez Gene focuses on the genomes that have been completely sequenced, that have an active research community to contribute gene-specific information, or that are scheduled for intense sequence analysis. The content of Entrez Gene represents the result of curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases, and from many other databases available from NCBI. Records are assigned unique, stable and tracked integers as identifiers. The content (nomenclature, map location, gene products and their attributes, markers, phenotypes, and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases) is updated as new information becomes available. Entrez Gene is a step forward from NCBI's LocusLink, with both a major increase in taxonomic scope and improved access through the many tools associated with NCBI Entrez.
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              Disorders affecting vitamin B6metabolism

              Vitamin B6 is present in our diet in many forms, however, only pyridoxal 5'-phosphate (PLP) can function as a cofactor for enzymes. The intestine absorbs nonphosphorylated B6 vitamers, which are converted by specific enzymes to the active PLP form. The role of PLP is enabled by its reactive aldehyde group. Pathways reliant on PLP include amino acid and neurotransmitter metabolism, folate and 1-carbon metabolism, protein and polyamine synthesis, carbohydrate and lipid metabolism, mitochondrial function and erythropoiesis. Besides the role of PLP as a cofactor B6 vitamers also play other cellular roles, for example, as antioxidants, modifying expression and action of steroid hormone receptors, affecting immune function, as chaperones and as an antagonist of Adenosine-5'-triphosphate (ATP) at P2 purinoceptors. Because of the vital role of PLP in neurotransmitter metabolism, particularly synthesis of the inhibitory transmitter γ-aminobutyric acid, it is not surprising that various inborn errors leading to PLP deficiency manifest as B6 -responsive epilepsy, usually of early onset. This includes pyridox(am)ine phosphate oxidase deficiency (a disorder affecting PLP synthesis and recycling), disorders affecting PLP import into the brain (hypophosphatasia and glycosylphosphatidylinositol anchor synthesis defects), a disorder of an intracellular PLP-binding protein (PLPBP, previously named PROSC) and disorders where metabolites accumulate that inactivate PLP, for example, ALDH7A1 deficiency and hyperprolinaemia type II. Patients with these disorders can show rapid control of seizures in response to either pyridoxine and/or PLP with a lifelong dependency on supraphysiological vitamin B6 supply. The clinical and biochemical features of disorders leading to B6 -responsive seizures and the treatment of these disorders are described in this review.
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                Author and article information

                Contributors
                malghamdi@ksu.edu.sa
                Journal
                Clin Genet
                Clin Genet
                10.1111/(ISSN)1399-0004
                CGE
                Clinical Genetics
                Blackwell Publishing Ltd (Oxford, UK )
                0009-9163
                1399-0004
                16 September 2020
                January 2021
                : 99
                : 1 ( doiID: 10.1111/cge.v99.1 )
                : 99-110
                Affiliations
                [ 1 ] Medical Genetics Division, Department of Pediatrics, College of Medicine King Saud University Riyadh Saudi Arabia
                [ 2 ] Department of Pediatrics King Saud University Medical City Riyadh Saudi Arabia
                [ 3 ] Neurology division, Department of Pediatrics, College of Medicine King Saud University Riyadh Saudi Arabia
                [ 4 ] Computer, Electrical and Mathematical Science and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC) King Abdullah University of Science and Technology (KAUST) Thuwal Saudi Arabia
                [ 5 ] College of Medicine Research Center, College of Medicine King Saud University Riyadh Saudi Arabia
                [ 6 ] Department of Radiology and Medical Imaging, College of Medicine King Saud University Riyadh Saudi Arabia
                [ 7 ] Clinical Biochemistry Unit, Department of Laboratory Medicine King Saud University Medical City, King Saud University Riyadh Saudi Arabia
                [ 8 ] Medical Research Core Facility and Platforms (MRCFP) King Abdullah International Medical, Research Center/King Saud bin Abdulaziz University for Health Sciences (KSAU‐HS), King, Abdulaziz Medical City (KAMC), NGHA Riyadh Saudi Arabia
                [ 9 ] Computational Bioscience, Research Center (CBRC); Division of Biological and Environmental Sciences and Engineering, (BESE) King Abdullah University of Science and Technology (KAUST) Thuwal Saudi Arabia
                [ 10 ] Centre de Biochimie Structurale, CNRS, INSERM Université de Montpellier Montpellier France
                Author notes
                [*] [* ] Correspondence

                Malak Alghamdi, Assistant Prof and Consultant, Department of Pediatrics, College of Medicine, King Saud University, Riyadh 91408, P.O. Box: 11633, Saudi Arabia.

                Email: malghamdi@ 123456ksu.edu.sa

                Author information
                https://orcid.org/0000-0002-8317-5951
                https://orcid.org/0000-0003-1436-6727
                Article
                CGE13843
                10.1111/cge.13843
                7820968
                32888189
                ca90bb9b-1592-4dc4-ba36-5ead5a58cc05
                © 2020 The Authors. Clinical Genetics published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 19 May 2020
                : 30 August 2020
                : 31 August 2020
                Page count
                Figures: 5, Tables: 3, Pages: 12, Words: 7257
                Funding
                Funded by: College of Medicine Research Center, Deanship of Scientific Research, King Saud University, Riyadh, Saudi Arabia
                Funded by: Dallah healthcare grant
                Award ID: CMRC‐DHG‐2/003
                Funded by: The research by STA reported in this publication was supported by funding from King Abdullah University of Science and Technology (KAUST), Office of Sponsored Research (OSR) , open-funder-registry 10.13039/501100004052;
                Award ID: FCC/1/1976‐25
                Categories
                Review
                Reviews
                Custom metadata
                2.0
                January 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.9.6 mode:remove_FC converted:22.01.2021

                Genetics
                neonatal epileptic encephalopathy,plp,pnpo,seizures,vitamin‐response epilepsy
                Genetics
                neonatal epileptic encephalopathy, plp, pnpo, seizures, vitamin‐response epilepsy

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