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      Aberrant Nuclear Export of circNCOR1 Underlies SMAD7-Mediated Lymph Node Metastasis of Bladder Cancer

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          Abstract

          This study identifies the novel intron-retained circNCOR1 and elucidates a SUMOylation-mediated DDX39B–circNCOR1–SMAD7 axis that regulates lymph node metastasis of bladder cancer.

          Abstract

          Circular RNAs (circRNA) containing retained introns are normally sequestered in the nucleus. Dysregulation of cellular homeostasis can drive their nuclear export, which may be involved in cancer metastasis. However, the mechanism underlying circRNA nuclear export and its role in lymph node (LN) metastasis of bladder cancer remain unclear. Here, we identify an intron-retained circRNA, circNCOR1, that is significantly downregulated in LN metastatic bladder cancer and is negatively associated with poor prognosis of patients. Overexpression of circNCOR1 inhibited lymphangiogenesis and LN metastasis of bladder cancer in vitro and in vivo. Nuclear circNCOR1 epigenetically promoted SMAD7 transcription by increasing heterogeneous nuclear ribonucleoprotein L (hnRNPL)–induced H3K9 acetylation in the SMAD7 promoter, leading to inhibition of the TGFβ-SMAD signaling pathway. Nuclear retention of circNCOR1 was regulated by small ubiquitin-like modifier (SUMO)ylation of DDX39B, an essential regulatory factor responsible for circRNA nuclear-cytoplasmic transport. Reduced SUMO2 binding to DDX39B markedly increased circNCOR1 retention in the nucleus to suppress bladder cancer LN metastasis. By contrast, SUMOylated DDX39B activated nuclear export of circNCOR1, impairing the suppressive role of circNCOR1 on TGFβ-SMAD cascade activation and bladder cancer LN metastasis. In patient-derived xenograft (PDX) models, overexpression of circNCOR1 and inhibition of TGFβ signaling significantly repressed tumor growth and LN metastasis. This study highlights SUMOylation-induced nuclear export of circNCOR1 as a key event regulating TGFβ-SMAD signaling and bladder cancer lymphangiogenesis, thus supporting circNCOR1 as a novel therapeutic agent for patients with LN metastatic bladder cancer.

          Significance:

          This study identifies the novel intron-retained circNCOR1 and elucidates a SUMOylation-mediated DDX39B–circNCOR1–SMAD7 axis that regulates lymph node metastasis of bladder cancer.

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          Exon-intron circular RNAs regulate transcription in the nucleus.

          Noncoding RNAs (ncRNAs) have numerous roles in development and disease, and one of the prominent roles is to regulate gene expression. A vast number of circular RNAs (circRNAs) have been identified, and some have been shown to function as microRNA sponges in animal cells. Here, we report a class of circRNAs associated with RNA polymerase II in human cells. In these circRNAs, exons are circularized with introns 'retained' between exons; we term them exon-intron circRNAs or EIciRNAs. EIciRNAs predominantly localize in the nucleus, interact with U1 snRNP and promote transcription of their parental genes. Our findings reveal a new role for circRNAs in regulating gene expression in the nucleus, in which EIciRNAs enhance the expression of their parental genes in cis, and highlight a regulatory strategy for transcriptional control via specific RNA-RNA interaction between U1 snRNA and EIciRNAs.
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            The expanding regulatory mechanisms and cellular functions of circular RNAs

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              Circular RNA: metabolism, functions and interactions with proteins

              Circular RNAs (CircRNAs) are single-stranded, covalently closed RNA molecules that are ubiquitous across species ranging from viruses to mammals. Important advances have been made in the biogenesis, regulation, localization, degradation and modification of circRNAs. CircRNAs exert biological functions by acting as transcriptional regulators, microRNA (miR) sponges and protein templates. Moreover, emerging evidence has revealed that a group of circRNAs can serve as protein decoys, scaffolds and recruiters. However, the existing research on circRNA-protein interactions is quite limited. Hence, in this review, we briefly summarize recent progress in the metabolism and functions of circRNAs and elaborately discuss the patterns of circRNA-protein interactions, including altering interactions between proteins, tethering or sequestering proteins, recruiting proteins to chromatin, forming circRNA-protein-mRNA ternary complexes and translocating or redistributing proteins. Many discoveries have revealed that circRNAs have unique expression signatures and play crucial roles in a variety of diseases, enabling them to potentially act as diagnostic biomarkers and therapeutic targets. This review systematically evaluates the roles and mechanisms of circRNAs, with the hope of advancing translational medicine involving circRNAs.
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                Author and article information

                Journal
                Cancer Res
                Cancer Res
                Cancer Research
                American Association for Cancer Research
                0008-5472
                1538-7445
                15 June 2022
                08 April 2022
                : 82
                : 12
                : 2239-2253
                Affiliations
                [1 ]Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
                [2 ]Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Medical Research Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
                [3 ]State Key Laboratory of Oncology in South China, Sun Yat-sen University Cancer Center, Guangzhou, Guangdong, China.
                [4 ]Pancreatic Center, Department of General Surgery, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong, China.
                [5 ]School of Medicine, South China University of Technology, Guangzhou, Guangdong, China.
                Author notes
                [#]

                M. An, H. Zheng, and J. Huang contributed equally to this article.

                [* ] Corresponding Authors: Tianxin Lin, Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, 107 Yanjiangyi Road, Yuexiu District, Guangzhou, Guangdong Province 510120, P. R. China. Phone: 8620-3407-0447; Fax: 8620-8133-2336; E-mail: lintx@ 123456mail.sysu.edu.cn ; and Changhao Chen, chenchh53@ 123456mail.sysu.edu.cn
                Author information
                https://orcid.org/0000-0002-9924-9054
                https://orcid.org/0000-0003-3180-8697
                Article
                CAN-21-4349
                10.1158/0008-5472.CAN-21-4349
                9359746
                35395674
                ca215098-e0af-43dc-807e-3535358bb8ae
                ©2022 The Authors; Published by the American Association for Cancer Research

                This open access article is distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license.

                History
                : 19 December 2021
                : 28 February 2022
                : 06 April 2022
                Page count
                Pages: 15
                Funding
                Funded by: National Key Research and Development Program of China, DOI https://doi.org/10.13039/501100012166;
                Award ID: 2018YFA0902803
                Funded by: National Natural Science Foundation of China, DOI https://doi.org/10.13039/501100001809;
                Award ID: 81825016
                Award ID: 81802530
                Award ID: 81871945
                Award ID: 81902589
                Award ID: 81772719
                Award ID: 81772728
                Award ID: 81972385
                Award ID: 82173272
                Award ID: 82103536
                Award ID: 82103416
                Award ID: 82173266
                Award ID: U21A20383
                Funded by: Guangdong Basic and Applied Basic Research Foundation, DOI ;
                Award ID: 2021A1515010355
                Award ID: 2021B1515020091
                Award ID: 2020A1515010815
                Award ID: 2018B010109006
                Funded by: Science and Technology Program of Guangzhou, China, DOI ;
                Award ID: 202002030388
                Award ID: 201803010049
                Award ID: 2017B020227007
                Categories
                Molecular Cell Biology

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