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      A computational overview of integrase strand transfer inhibitors (INSTIs) against emerging and evolving drug-resistant HIV-1 integrase mutants

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          Abstract

          AIDS (Acquired immunodeficiency syndrome) is one of the chronic and potentially life-threatening epidemics across the world. Hitherto, the non-existence of definitive drugs that could completely cure the Human immunodeficiency virus (HIV) implies an urgent necessity for the discovery of novel anti-HIV agents. Since integration is the most crucial stage in retroviral replication, hindering it can inhibit overall viral transmission. The 5 FDA-approved integrase inhibitors were computationally investigated, especially owing to the rising multiple mutations against their susceptibility. This comparative study will open new possibilities to guide the rational design of novel lead compounds for antiretroviral therapies (ARTs), more specifically the structure-based design of novel Integrase strand transfer inhibitors (INSTIs) that may possess a better resistance profile than present drugs. Further, we have discussed potent anti-HIV natural compounds and their interactions as an alternative approach, recommending the urgent need to tap into the rich vein of indigenous knowledge for reverse pharmacology. Moreover, herein, we discuss existing evidence that might change in the near future.

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          Supplementary Information

          The online version contains supplementary material available at 10.1007/s00203-023-03461-8.

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          Most cited references121

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          Is Open Access

          Microglial Cells: The Main HIV-1 Reservoir in the Brain

          Despite efficient combination of the antiretroviral therapy (cART), which significantly decreased mortality and morbidity of HIV-1 infection, a definitive HIV cure has not been achieved. Hidden HIV-1 in cellular and anatomic reservoirs is the major hurdle toward a functional cure. Microglial cells, the Central Nervous system (CNS) resident macrophages, are one of the major cellular reservoirs of latent HIV-1. These cells are believed to be involved in the emergence of drugs resistance and reseeding peripheral tissues. Moreover, these long-life reservoirs are also involved in the development of HIV-1-associated neurocognitive diseases (HAND). Clearing these infected cells from the brain is therefore crucial to achieve a cure. However, many characteristics of microglial cells and the CNS hinder the eradication of these brain reservoirs. Better understandings of the specific molecular mechanisms of HIV-1 latency in microglial cells should help to design new molecules and new strategies preventing HAND and achieving HIV cure. Moreover, new strategies are needed to circumvent the limitations associated to anatomical sanctuaries with barriers such as the blood brain barrier (BBB) that reduce the access of drugs.
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            2019 update of the drug resistance mutations in HIV-1.

            The 2019 edition of the IAS-USA drug resistance mutations list updates the Figure last published in January 2017. The mutations listed are those that have been identified by specific criteria for evidence and drugs described. The Figure is designed to assist practitioners in identifying key mutations associated with resistance to antiretroviral drugs, and therefore, in making clinical decisions regarding antiretroviral therapy.
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              Human Immunodeficiency Virus (HIV)

              (2016)
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                Author and article information

                Contributors
                tdsonawane@mum.amity.edu
                Journal
                Arch Microbiol
                Arch Microbiol
                Archives of Microbiology
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0302-8933
                1432-072X
                26 March 2023
                2023
                : 205
                : 4
                : 142
                Affiliations
                [1 ]GRID grid.444644.2, ISNI 0000 0004 1805 0217, Amity Institute of Biotechnology, , Amity University, ; Mumbai, Maharashtra 410206 India
                [2 ]GRID grid.412490.a, ISNI 0000 0004 0538 1156, Regenerative Medicine Laboratory, Department of Zoology, School of Life Sciences, , Periyar University, ; Salem, Tamil Nadu 636011 India
                [3 ]GRID grid.448768.1, ISNI 0000 0004 1772 7660, Central University of Tamil Nadu, ; Thiruvarur, Tamil Nadu 610005 India
                Author notes

                Communicated by Yusuf Akhter.

                Author information
                http://orcid.org/0000-0001-7784-6889
                Article
                3461
                10.1007/s00203-023-03461-8
                10039815
                36966200
                c8d1a11f-e567-4425-bc45-2c15fd97cbe9
                © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

                This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

                History
                : 2 February 2023
                : 26 February 2023
                : 1 March 2023
                Categories
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                © Springer-Verlag GmbH Germany, part of Springer Nature 2023

                Microbiology & Virology
                antiretroviral drugs,integrase strand transfer inhibitors (instis),drug resistance,docking interactions,resistance-associated mutations (rams),natural bioactive molecules

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