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      The Possible Preventative Role of Lactate- and Butyrate-Producing Bacteria in Colorectal Carcinogenesis

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          Abstract

          Background/Aims

          The gut microbiome has emerged as a key player that mechanistically links various risk factors to colorectal cancer (CRC) etiology. However, the role of the gut microbiome in CRC pathogenesis remains unclear. This study aimed to characterize the gut microbiota in healthy controls (HCs) and patients with colorectal adenoma (AD) and CRC in subgroups based on sex and age.

          Methods

          Study participants who visited the hospital for surveillance of CRC or gastrointestinal symptoms were prospectively enrolled, and the gut microbiome was analyzed based on fecal samples.

          Results

          In terms of HC-AD-CRC sequence, commensal bacteria, including lactate-producing ( Streptococcus salivarius) and butyrate-producing ( Faecalibacterium prausnitzii, Anaerostipes hadrus, and Eubacterium hallii) bacteria, were more abundant in the HC group than in the AD and CRC groups. In the sex comparison, the female HC group had more lactate-producing bacteria ( Bifidobacterium adolescentis, Bifidobacterium catenulatum, and Lactobacillus ruminis) than the male HC group. In age comparison, younger subjects had more butyrate-producing bacteria ( Agathobaculum butyriciproducens and Blautia faecis) than the older subjects in the HC group. Interestingly, lactate-producing bacteria ( B. catenulatum) were more abundant in females than males among younger HC group subjects. However, these sex- and age-dependent differences were not observed in the AD and CRC groups.

          Conclusions

          The gut microbiome, specifically lactate- and butyrate-producing bacteria, which were found to be abundant in the HC group, may play a role in preventing the progression of CRC. In particular, lactate-producing bacteria, which were found to be less abundant in healthy male controls may contribute to the higher incidence of CRC in males.

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          Most cited references42

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          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
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            Metagenomic biomarker discovery and explanation

            This study describes and validates a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation. This addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities, which is a central problem to the study of metagenomics. We extensively validate our method on several microbiomes and a convenient online interface for the method is provided at http://huttenhower.sph.harvard.edu/lefse/.
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              Search and clustering orders of magnitude faster than BLAST.

              Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. Binaries are available at no charge for non-commercial use at http://www.drive5.com/usearch.
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                Author and article information

                Journal
                Gut Liver
                Gut Liver
                Gut and Liver
                Editorial Office of Gut and Liver
                1976-2283
                2005-1212
                15 July 2024
                30 November 2023
                30 November 2023
                : 18
                : 4
                : 654-666
                Affiliations
                [1 ]Department of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Korea
                [2 ]Department of Internal Medicine and Liver Research Institute, Seoul National University College of Medicine, Seoul, Korea
                [3 ]Viral Immunology Laboratory, Institut Pasteur Korea, Seongnam, Korea
                [4 ]Department of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, Korea
                Author notes
                Corresponding Author Nayoung Kim, ORCID https://orcid.org/0000-0002-9397-0406, E-mail nakim49@ 123456snu.ac.kr
                Author information
                https://orcid.org/0000-0002-3489-5944
                https://orcid.org/0000-0002-9397-0406
                https://orcid.org/0000-0002-6515-4540
                https://orcid.org/0000-0001-6625-7608
                https://orcid.org/0000-0003-2463-7746
                https://orcid.org/0009-0007-7915-3972
                https://orcid.org/0000-0002-7297-4256
                https://orcid.org/0000-0002-1331-969X
                https://orcid.org/0000-0002-2657-0349
                https://orcid.org/0000-0002-8438-3365
                https://orcid.org/0000-0003-0379-3619
                Article
                gnl-18-4-654
                10.5009/gnl230385
                11249946
                38030382
                c8bc9cf3-3c11-4d6a-af9e-d3f4db86e54e
                Copyright © Gut and Liver.

                This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 26 September 2023
                : 4 November 2023
                : 9 November 2023
                : 26 February 2024
                Funding
                ACKNOWLEDGEMENTS This work was supported by a grant from the National Research Foundation of Korea (NRF) funded by the Korean government (2019R1A2C2085149), the Technology Innovation Program (20018499) funded by the Ministry of Trade, Industry & Energy (MOTIE, Korea), and by grant number 13-2021-013 from the Seoul National University Bundang Hospital Research fund.
                Categories
                Original Article
                Alimentary Tract

                Gastroenterology & Hepatology
                age distribution,biomarkers,colorectal neoplasms,gastrointestinal microbiome,sex

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