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      Structure of human lysosomal acid α-glucosidase–a guide for the treatment of Pompe disease

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          Abstract

          Pompe disease, a rare lysosomal storage disease caused by deficiency of the lysosomal acid α-glucosidase (GAA), is characterized by glycogen accumulation, triggering severe secondary cellular damage and resulting in progressive motor handicap and premature death. Numerous disease-causing mutations in the gaa gene have been reported, but the structural effects of the pathological variants were unknown. Here we present the high-resolution crystal structures of recombinant human GAA (rhGAA), the standard care of Pompe disease. These structures portray the unbound form of rhGAA and complexes thereof with active site-directed inhibitors, providing insight into substrate recognition and the molecular framework for the rationalization of the deleterious effects of disease-causing mutations. Furthermore, we report the structure of rhGAA in complex with the allosteric pharmacological chaperone N-acetylcysteine, which reveals the stabilizing function of this chaperone at the structural level.

          Abstract

          Pompe disease is caused by mutations in lysosomal acid α-glucosidase (GAA) and patients are being treated with recombinant human α-glucosidase (rhGAA). Here the authors present the crystal structures of rhGAA and its complexes with inhibitors and a pharmacological chaperone, which is important for drug development.

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          Protein disorder prediction: implications for structural proteomics.

          A great challenge in the proteomics and structural genomics era is to predict protein structure and function, including identification of those proteins that are partially or wholly unstructured. Disordered regions in proteins often contain short linear peptide motifs (e.g., SH3 ligands and targeting signals) that are important for protein function. We present here DisEMBL, a computational tool for prediction of disordered/unstructured regions within a protein sequence. As no clear definition of disorder exists, we have developed parameters based on several alternative definitions and introduced a new one based on the concept of "hot loops," i.e., coils with high temperature factors. Avoiding potentially disordered segments in protein expression constructs can increase expression, foldability, and stability of the expressed protein. DisEMBL is thus useful for target selection and the design of constructs as needed for many biochemical studies, particularly structural biology and structural genomics projects. The tool is freely available via a web interface (http://dis.embl.de) and can be downloaded for use in large-scale studies.
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            Nomenclature for sugar-binding subsites in glycosyl hydrolases.

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              Notes on sugar determination.

              M SMOGYI (1952)
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                Author and article information

                Contributors
                Gerlind.Sulzenbacher@afmb.univ-mrs.fr
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                24 October 2017
                24 October 2017
                2017
                : 8
                : 1111
                Affiliations
                [1 ]ISNI 0000 0004 1798 275X, GRID grid.463764.4, Centre National de la Recherche Scientifique (CNRS), , Aix-Marseille Univ, AFMB, ; 163 Avenue de Luminy, 13288 Marseille, France
                [2 ]ISNI 0000 0001 1940 4177, GRID grid.5326.2, Institute of Biosciences and Bioresources, , National Research Council of Italy, ; Via P. Castellino 111, 80131 Naples, Italy
                [3 ]Telethon Institute of Genetics and Medicine (TIGEM), Via Campi Flegrei 34, Pozzuoli, 80078 Naples Italy
                [4 ]ISNI 0000 0001 0790 385X, GRID grid.4691.a, Department of Translational Medical Sciences, , Federico II University, ; Via Pansini 5, 80131 Naples, Italy
                [5 ]ISNI 0000 0001 0790 385X, GRID grid.4691.a, Department of Biology, , Federico II University, Complesso Universitario di Monte S. Angelo, ; Via Cintia 21, 80126 Naples, Italy
                Author information
                http://orcid.org/0000-0002-8211-2297
                http://orcid.org/0000-0002-3586-4322
                http://orcid.org/0000-0001-8905-2488
                http://orcid.org/0000-0002-9846-2531
                http://orcid.org/0000-0003-4844-2820
                Article
                1263
                10.1038/s41467-017-01263-3
                5653652
                29061980
                c66f9ab1-29b1-4484-9686-c718df208e5e
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 28 June 2017
                : 1 September 2017
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