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      The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens

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          Abstract

          Human fungal pathogens are attributable to a significant economic burden and mortality worldwide. Antifungal treatments, although limited in number, play a pivotal role in decreasing mortality and morbidities posed by invasive fungal infections (IFIs). However, the recent emergence of multidrug-resistant Candida auris and Candida glabrata and acquiring invasive infections due to azole-resistant C. parapsilosis, C. tropicalis, and Aspergillus spp. in azole-naïve patients pose a serious health threat considering the limited number of systemic antifungals available to treat IFIs. Although advancing for major fungal pathogens, the understanding of fungal attributes contributing to antifungal resistance is just emerging for several clinically important MDR fungal pathogens. Further complicating the matter are the distinct differences in antifungal resistance mechanisms among various fungal species in which one or more mechanisms may contribute to the resistance phenotype. In this review, we attempt to summarize the burden of antifungal resistance for selected non- albicans Candida and clinically important Aspergillus species together with their phylogenetic placement on the tree of life. Moreover, we highlight the different molecular mechanisms between antifungal tolerance and resistance, and comprehensively discuss the molecular mechanisms of antifungal resistance in a species level.

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          Most cited references244

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          Hidden killers: human fungal infections.

          Although fungal infections contribute substantially to human morbidity and mortality, the impact of these diseases on human health is not widely appreciated. Moreover, despite the urgent need for efficient diagnostic tests and safe and effective new drugs and vaccines, research into the pathophysiology of human fungal infections lags behind that of diseases caused by other pathogens. In this Review, we highlight the importance of fungi as human pathogens and discuss the challenges we face in combating the devastating invasive infections caused by these microorganisms, in particular in immunocompromised individuals.
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            Practice Guidelines for the Diagnosis and Management of Aspergillosis: 2016 Update by the Infectious Diseases Society of America.

            It is important to realize that guidelines cannot always account for individual variation among patients. They are not intended to supplant physician judgment with respect to particular patients or special clinical situations. IDSA considers adherence to these guidelines to be voluntary, with the ultimate determination regarding their application to be made by the physician in the light of each patient's individual circumstances.
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              Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.

              Candida auris, a multidrug-resistant yeast that causes invasive infections, was first described in 2009 in Japan and has since been reported from several countries.
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                Author and article information

                Journal
                J Fungi (Basel)
                J Fungi (Basel)
                jof
                Journal of Fungi
                MDPI
                2309-608X
                18 August 2020
                September 2020
                : 6
                : 3
                : 138
                Affiliations
                [1 ]Center for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ 07110, USA; Rocio.GarciaRubio@ 123456hmh-cdi.org
                [2 ]Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; cornelia.lass-floerl@ 123456i-med.ac.at
                [3 ]Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands; farnaz.daneshnia@ 123456gmail.com (F.D.); t.boekhout@ 123456wi.knaw.nl (T.B.)
                [4 ]Division of Mycology, University of Çukurova, 01330 Adana, Turkey; macitilkit@ 123456gmail.com
                [5 ]Institute of Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, 1012 WX Amsterdam, The Netherlands
                [6 ]Life Sciences Programme, Barcelona, Supercomputing Center (BSC-CNS), Jordi Girona, 08034 Barcelona, Spain; tonigaes@ 123456gmail.com
                [7 ]Mechanisms of Disease Programme, Institute for Research in Biomedicine (IRB), 08024 Barcelona, Spain
                [8 ]Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain
                Author notes
                [* ]Correspondence: a.arastehfar.nl@ 123456gmail.com (A.A.); david.perlin@ 123456hmh-cdi.org (D.S.P.); Tel./Fax: +1-201-880-3100 (A.A. & D.S.P.)
                Author information
                https://orcid.org/0000-0002-4361-4841
                https://orcid.org/0000-0002-2946-7785
                https://orcid.org/0000-0003-4610-2996
                https://orcid.org/0000-0002-1174-4182
                https://orcid.org/0000-0002-0476-3609
                https://orcid.org/0000-0003-0019-1735
                Article
                jof-06-00138
                10.3390/jof6030138
                7557958
                32824785
                c6587501-4e0e-4a16-896a-264fbff94aa1
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 05 July 2020
                : 11 August 2020
                Categories
                Review

                candida glabrata,candida parapsilosis,candida tropicalis,candida auris,aspergillus terreus,aspergillus fumigatus,antifungal resistance mechanisms

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