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      Shigella flexneri Adherence Factor Expression in In Vivo-Like Conditions

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          Abstract

          Bacterial pathogens have evolved to regulate virulence gene expression at critical points in the colonization and infection processes to successfully cause disease. The Shigella species infect the epithelial cells lining the colon to result in millions of cases of diarrhea and a significant global health burden. As antibiotic resistance rates increase, understanding the mechanisms of infection is vital to ensure successful vaccine development. Despite significant gains in our understanding of Shigella infection, it remains unknown how the bacteria initiate contact with the colonic epithelium. Most pathogens harbor multiple adherence factors to facilitate this process, but Shigella was thought to have lost the ability to produce these factors. Interestingly, we have identified conditions that mimic some features of gastrointestinal transit and that enable Shigella to express adherence structural genes. This work highlights aspects of genetic regulation for Shigella adherence factors and may have a significant impact on future vaccine development.

          ABSTRACT

          The Shigella species are Gram-negative, facultative intracellular pathogens that invade the colonic epithelium and cause significant diarrheal disease. Despite extensive research on the pathogen, a comprehensive understanding of how Shigella initiates contact with epithelial cells remains unknown. Shigella maintains many of the same Escherichia coli adherence gene operons; however, at least one critical gene component in each operon is currently annotated as a pseudogene in reference genomes. These annotations, coupled with a lack of structures upon microscopic analysis following growth in laboratory media, have led the field to hypothesize that Shigella is unable to produce fimbriae or other traditional adherence factors. Nevertheless, our previous analyses have demonstrated that a combination of bile salts and glucose induces both biofilm formation and adherence to colonic epithelial cells. The goal of this study was to perform transcriptomic and genetic analyses to demonstrate that adherence gene operons in Shigella flexneri strain 2457T are functional, despite the gene annotations. Our results demonstrate that at least three structural genes facilitate S. flexneri 2457T adherence for epithelial cell contact and biofilm formation. Furthermore, our results demonstrate that host factors, namely, glucose and bile salts at their physiological concentrations in the small intestine, offer key environmental stimuli required for adherence factor expression in S. flexneri. This research may have a significant impact on Shigella vaccine development and further highlights the importance of utilizing in vivo-like conditions to study bacterial pathogenesis.

          IMPORTANCE Bacterial pathogens have evolved to regulate virulence gene expression at critical points in the colonization and infection processes to successfully cause disease. The Shigella species infect the epithelial cells lining the colon to result in millions of cases of diarrhea and a significant global health burden. As antibiotic resistance rates increase, understanding the mechanisms of infection is vital to ensure successful vaccine development. Despite significant gains in our understanding of Shigella infection, it remains unknown how the bacteria initiate contact with the colonic epithelium. Most pathogens harbor multiple adherence factors to facilitate this process, but Shigella was thought to have lost the ability to produce these factors. Interestingly, we have identified conditions that mimic some features of gastrointestinal transit and that enable Shigella to express adherence structural genes. This work highlights aspects of genetic regulation for Shigella adherence factors and may have a significant impact on future vaccine development.

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          Most cited references72

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          Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant.

          Two cassettes with tetracycline-resistance (TcR) and kanamycin-resistance (KmR) determinants have been developed for the construction of insertion and deletion mutants of cloned genes in Escherichia coli. In both cassettes, the resistance determinants are flanked by the short direct repeats (FRT sites) required for site-specific recombination mediated by the yeast Flp recombinase. In addition, a plasmid with temperature-sensitive replication for temporal production of the Flp enzyme in E. coli has been constructed. After a gene disruption or deletion mutation is constructed in vitro by insertion of one of the cassettes into a given gene, the mutated gene is transferred to the E. coli chromosome by homologous recombination and selection for the antibiotic resistance provided by the cassette. If desired, the resistance determinant can subsequently be removed from the chromosome in vivo by Flp action, leaving behind a short nucleotide sequence with one FRT site and with no polar effect on downstream genes. This system was applied in the construction of an E. coli endA deletion mutation which can be transduced by P1 to the genetic background of interest using TcR as a marker. The transductant can then be freed of the TcR if required.
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            In vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture.

            It is useful to be able to grow enriched populations of stem cells in vitro. Growth of stem cells as tissue spheroids is a key methodology permitting sustainable culture of adult epithelial cells. Gastrointestinal stem cells can be propagated by using conditioned medium from a supportive cell line (L-WRN). This protocol describes how to prepare conditioned medium and how to culture stem cell-enriched epithelial spheroids from the mouse gastrointestine. These spheroids are also amenable to genetic modification with recombinant lentiviruses. This system enables many types of cell biological assays that have been performed with immortalized cell lines to be applied to spheroids. Isolation of epithelial cell units from mice takes up to 2 h, and stem cell-enriched gastrointestinal spheroids are obtained within 3 d. Genetically modified spheroids with lentiviruses can be obtained in 2 weeks.
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              Here we describe the isolation of stem cells of the human colonic epithelium. Differential cell surface abundance of ephrin type-B receptor 2 (EPHB2) allows the purification of different cell types from human colon mucosa biopsies. The highest EPHB2 surface levels correspond to epithelial colonic cells with the longest telomeres and elevated expression of intestinal stem cell (ISC) marker genes. Moreover, using culturing conditions that recreate the ISC niche, a substantial proportion of EPHB2-high cells can be expanded in vitro as an undifferentiated and multipotent population.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                mSphere
                mSphere
                msph
                msph
                mSphere
                mSphere
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2379-5042
                13 November 2019
                Nov-Dec 2019
                : 4
                : 6
                : e00751-19
                Affiliations
                [a ]Mucosal Immunology and Biology Research Center, Division of Pediatric Gastroenterology and Nutrition, Massachusetts General Hospital, Boston, Massachusetts, USA
                [b ]Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, USA
                [c ]Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA
                [d ]Genetics and Aging Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts, USA
                [e ]Biopharmaceutical Analysis Training Laboratory, Northeastern University Innovation Campus, Burlington, Massachusetts, USA
                University of Iowa
                Author notes
                Address correspondence to Christina S. Faherty, csfaherty@ 123456mgh.harvard.edu .
                [*]

                Present address: Rachael B. Chanin, Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, USA; Kourtney P. Nickerson, Charles River Labs, Wilmington, Massachusetts, USA; Alejandro Llanos-Chea, Division of Pediatric Gastroenterology, Hepatology and Nutrition, Miller School of Medicine, University of Miami, Miami, Florida, USA; Jeticia R. Sistrunk, Department of Biology, Spelman College, Atlanta, Georgia, USA; John de la Parra, Harvard University Herbaria, Harvard University, and Open Agriculture Initiative, MIT Media Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

                R.B.C. and K.P.N. contributed equally to this article.

                Citation Chanin RB, Nickerson KP, Llanos-Chea A, Sistrunk JR, Rasko DA, Kumar DKV, de la Parra J, Auclair JR, Ding J, Li K, Dogiparthi SK, Kusber BJD, Faherty CS. 2019. Shigella flexneri adherence factor expression in in vivo-like conditions. mSphere 4:e00751-19. https://doi.org/10.1128/mSphere.00751-19.

                Author information
                https://orcid.org/0000-0002-4625-356X
                https://orcid.org/0000-0002-7337-7154
                https://orcid.org/0000-0002-3388-6421
                https://orcid.org/0000-0002-3200-161X
                Article
                mSphere00751-19
                10.1128/mSphere.00751-19
                6854044
                31722995
                c41bcd47-b5b7-4e95-961b-33064e7d8740
                Copyright © 2019 Chanin et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 17 October 2019
                : 21 October 2019
                Page count
                supplementary-material: 5, Figures: 9, Tables: 3, Equations: 0, References: 93, Pages: 23, Words: 15003
                Funding
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), https://doi.org/10.13039/100000060;
                Award ID: K22 AI104755
                Award Recipient :
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), https://doi.org/10.13039/100000060;
                Award ID: T32 AI095190-04
                Award Recipient :
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), https://doi.org/10.13039/100000060;
                Award ID: U19 AI110820
                Award Recipient :
                Funded by: HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), https://doi.org/10.13039/100000062;
                Award ID: R25 DK103579
                Award Recipient : Award Recipient : Award Recipient :
                Categories
                Research Article
                Host-Microbe Biology
                Custom metadata
                November/December 2019

                shigella flexneri,adherence factors,long polar fimbriae,type 1 fimbriae,curli,bile salts,glucose,biofilm,in vivo-like conditions,intestinal,epithelial cells

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