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      Control of gene expression by translational recoding

      other
      Advances in Protein Chemistry and Structural Biology
      Elsevier Inc.
      Reading frame, mRNA, Pseudoknot, Genome, Frameshift

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          Abstract

          Like all rules, even the genetic code has exceptions: these are generically classified as “translational recoding.” Almost every conceivable mode of recoding has been documented, including signals that redefine translational reading frame and codon assignation. While first described in viruses, it is becoming clear that sequences that program elongating ribosomes to shift translational reading frame are widely used by organisms in all domains of life, thus expanding both the coding capacity of genomes and the modes through which gene expression can be regulated at the posttranscriptional level. Instances of programmed ribosomal frameshifting and stop codon reassignment are opening up new avenues for treatment of numerous inborn errors of metabolism. The implications of these findings on human health are only beginning to emerge.

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          Most cited references92

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          Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.

          Pyrrolysine is a lysine derivative encoded by the UAG codon in methylamine methyltransferase genes of Methanosarcina barkeri. Near a methyltransferase gene cluster is the pylT gene, which encodes an unusual transfer RNA (tRNA) with a CUA anticodon. The adjacent pylS gene encodes a class II aminoacyl-tRNA synthetase that charges the pylT-derived tRNA with lysine but is not closely related to known lysyl-tRNA synthetases. Homologs of pylS and pylT are found in a Gram-positive bacterium. Charging a tRNA(CUA) with lysine is a likely first step in translating UAG amber codons as pyrrolysine in certain methanogens. Our results indicate that pyrrolysine is the 22nd genetically encoded natural amino acid.
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            Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species.

            Nonsense-mediated mRNA decay (NMD) is an mRNA surveillance pathway that ensures the rapid degradation of mRNAs containing premature translation termination codons (PTCs), thereby preventing the synthesis of truncated and potentially harmful proteins. In addition, this pathway regulates the expression of approximately 10% of the transcriptome and is essential in mice. Although NMD is conserved in eukaryotes, recent studies in several organisms have revealed that different mechanisms have evolved to discriminate natural from premature stop codons and to degrade the targeted mRNAs. With the elucidation of the first crystal structures of components of the NMD machinery, the way is paved towards a molecular understanding of the protein interaction network underlying this process.
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              • Record: found
              • Abstract: not found
              • Article: not found

              Programmed translational frameshifting.

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                Author and article information

                Journal
                Adv Protein Chem Struct Biol
                Adv Protein Chem Struct Biol
                Advances in Protein Chemistry and Structural Biology
                Elsevier Inc.
                1876-1623
                1876-1631
                12 January 2012
                2012
                12 January 2012
                : 86
                : 129-149
                Affiliations
                Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA
                Article
                B978-0-12-386497-0.00004-9
                10.1016/B978-0-12-386497-0.00004-9
                7149833
                22243583
                c3e9b63c-d049-480c-946b-b58877bba03b
                Copyright © 2012 Elsevier Inc. All rights reserved.

                Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

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                reading frame,mrna,pseudoknot,genome,frameshift
                reading frame, mrna, pseudoknot, genome, frameshift

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