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      The Sino-Himalayan flora evolved from lowland biomes dominated by tropical floristic elements

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          Abstract

          Background

          The Sino-Himalayan flora harbors highly diverse high-elevation biotas, but our understanding of its evolutionary history in temporal and spatial dimensions is limited. In this study, we integrated a dated phylogenetic tree with comprehensive species distribution data to investigate changes over time and space in floristic elements, including the tropical, Tethys, northern temperate, and East Asian floristic elements, across the entire Sino-Himalaya and its three floristic regions: the Yunnan Plateau, Hengduan Mountains, and East Himalaya regions.

          Results

          Our results revealed that the Sino-Himalayan flora developed from lowland biomes and was predominantly characterized by tropical floristic elements before the collision between the Indian subcontinent and Eurasia during the Early Cenozoic. Subsequently, from the Late Eocene onwards, the uplifts of the Himalaya and Hengduan Mountains transformed the Sino-Himalayan region into a wet and cold plateau, on which harsh and diverse ecological conditions forced the rapid evolution of local angiosperms, giving birth to characteristic taxa adapted to the high altitudes and cold habitat. The percentage of temperate floristic elements increased and exceeded that of tropical floristic elements by the Late Miocene.

          Conclusions

          The Sino-Himalayan flora underwent four significant formation periods and experienced a considerable increase in endemic genera and species in the Miocene, which remain crucial to the present-day patterns of plant diversity. Our findings support the view that the Sino-Himalayan flora is relatively young but has ancient origins. The three major shifts in the divergence of genera and species during the four formation periods were primarily influenced by the uplifts of the Himalaya and Hengduan Mountains and the onset and intensification of the Asian monsoon system. Additionally, the temporal patterns of floristic elements differed among the three floristic regions of the Sino-Himalaya, indicating that the uplift of the Himalaya and surrounding areas was asynchronous. Compared to the Yunnan Plateau region, the East Himalaya and Hengduan Mountains experienced more recent and drastic uplifts, resulting in highly intricate topography with diverse habitats that promoted the rapid radiation of endemic genera and species in these regions.

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s12915-023-01746-4.

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          Most cited references86

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          Biodiversity hotspots for conservation priorities.

          Conservationists are far from able to assist all species under threat, if only for lack of funding. This places a premium on priorities: how can we support the most species at the least cost? One way is to identify 'biodiversity hotspots' where exceptional concentrations of endemic species are undergoing exceptional loss of habitat. As many as 44% of all species of vascular plants and 35% of all species in four vertebrate groups are confined to 25 hotspots comprising only 1.4% of the land surface of the Earth. This opens the way for a 'silver bullet' strategy on the part of conservation planners, focusing on these hotspots in proportion to their share of the world's species at risk.
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            APE: Analyses of Phylogenetics and Evolution in R language.

            Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes. The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html#ape. APE is licensed under the GNU General Public License.
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              Evolution of Asian monsoons and phased uplift of the Himalaya-Tibetan plateau since Late Miocene times.

              The climates of Asia are affected significantly by the extent and height of the Himalayan mountains and the Tibetan plateau. Uplift of this region began about 50 Myr ago, and further significant increases in altitude of the Tibetan plateau are thought to have occurred about 10-8 Myr ago, or more recently. However, the climatic consequences of this uplift remain unclear. Here we use records of aeolian sediments from China and marine sediments from the Indian and North Pacific oceans to identify three stages of evolution of Asian climates: first, enhanced aridity in the Asian interior and onset of the Indian and east Asian monsoons, about 9-8 Myr ago; next, continued intensification of the east Asian summer and winter monsoons, together with increased dust transport to the North Pacific Ocean, about 3.6-2.6 Myr ago; and last, increased variability and possible weakening of the Indian and east Asian summer monsoons and continued strengthening of the east Asian winter monsoon since about 2.6 Myr ago. The results of a numerical climate-model experiment, using idealized stepwise increases of mountain-plateau elevation, support the argument that the stages in evolution of Asian monsoons are linked to phases of Himalaya-Tibetan plateau uplift and to Northern Hemisphere glaciation.
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                Author and article information

                Contributors
                zhiduan@ibcas.ac.cn
                Journal
                BMC Biol
                BMC Biol
                BMC Biology
                BioMed Central (London )
                1741-7007
                31 October 2023
                31 October 2023
                2023
                : 21
                : 239
                Affiliations
                [1 ]GRID grid.435133.3, ISNI 0000 0004 0596 3367, State Key Laboratory of Plant Diversity and Specialty Crops, , Institute of Botany, Chinese Academy of Sciences, ; 20 Nanxincun, Xiangshan, Beijing, 100093 China
                [2 ]China National Botanical Garden, Beijing, 100093 China
                [3 ]University of Chinese Academy of Sciences, ( https://ror.org/05qbk4x57) Beijing, 100049 China
                [4 ]State Key Laboratory of Biocontrol, School of Ecology, Shenzhen Campus, Sun Yat-Sen University, ( https://ror.org/0064kty71) Shenzhen, 518107 China
                [5 ]GRID grid.458460.b, ISNI 0000 0004 1764 155X, Key Laboratory of Biodiversity and Biogeography, , Kunming Institute of Botany, Chinese Academy of Sciences, ; Kunming, 650204 China
                [6 ]Sino-Africa Joint Research Centre, Chinese Academy of Sciences, ( https://ror.org/034t30j35) Wuhan, 430074 China
                Article
                1746
                10.1186/s12915-023-01746-4
                10617089
                37904140
                c245295a-d249-4618-9f2a-a3b8e5837184
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 15 March 2023
                : 24 October 2023
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 32122009
                Award ID: 31590822
                Award ID: 32270233
                Award ID: 32200190
                Award Recipient :
                Funded by: Strategic Priority Research Programme of the Chinese Academy of Sciences
                Award ID: XDB31000000
                Award ID: XDA19050103
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100012165, Key Technologies Research and Development Program;
                Award ID: 2022YFF0802300
                Award Recipient :
                Funded by: International Partnership Program of the Chinese Academy of Sciences
                Award ID: 151853KYSB20190027
                Award Recipient :
                Funded by: Shenzhen Science and Technology Program
                Award ID: 202206193000001
                Award ID: 20220816162653003
                Award Recipient :
                Funded by: the Sino-Africa Joint Research Center, CAS International Research and Education Development Program
                Award ID: SAJC202101
                Award Recipient :
                Categories
                Research Article
                Custom metadata
                © BioMed Central Ltd., part of Springer Nature 2023

                Life sciences
                asian monsoon,endemism,evolutionary history,floristic elements,assembly process,uplift of himalaya,mountain biodiversity,sino-himalayan flora

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