5
views
0
recommends
+1 Recommend
1 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Multi-scale habitat modelling and predicting change in the distribution of tiger and leopard using random forest algorithm

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Tigers and leopards have experienced considerable declines in their population due to habitat loss and fragmentation across their historical ranges. Multi-scale habitat suitability models (HSM) can inform forest managers to aim their conservation efforts at increasing the suitable habitat for tigers by providing information regarding the scale-dependent habitat-species relationships. However the current gap of knowledge about ecological relationships driving species distribution reduces the applicability of traditional and classical statistical approaches such as generalized linear models (GLMs), or occupancy surveys to produce accurate predictive maps. This study investigates the multi-scale habitat relationships of tigers and leopards and the impacts of future climate change on their distribution using a machine-learning algorithm random forest (RF). The recent advancements in the machine-learning algorithms provide a powerful tool for building accurate predictive models of species distribution and their habitat relationships even when little ecological knowledge is available about the species. We collected species occurrence data using camera traps and indirect evidence of animal presences (scats) in the field over 2 years of rigorous sampling and used a machine-learning algorithm random forest (RF) to predict the habitat suitability maps of tiger and leopard under current and future climatic scenarios. We developed niche overlap models based on the recently developed statistical approaches to assess the patterns of niche similarity between tigers and leopards. Tiger and leopard utilized habitat resources at the broadest spatial scales (28,000 m). Our model predicted a 23% loss in the suitable habitat of tigers under the RCP 8.5 Scenario (2050). Our study of multi-scale habitat suitability modeling provides valuable information on the species habitat relationships in disturbed and human-dominated landscapes concerning two large felid species of conservation importance. These areas may act as refugee habitats for large carnivores in the future and thus should be the focus of conservation importance. This study may also provide a methodological framework for similar multi-scale and multi-species monitoring programs using robust and more accurate machine learning algorithms such as random forest.

          Related collections

          Most cited references80

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Gene selection and classification of microarray data using random forest

          Background Selection of relevant genes for sample classification is a common task in most gene expression studies, where researchers try to identify the smallest possible set of genes that can still achieve good predictive performance (for instance, for future use with diagnostic purposes in clinical practice). Many gene selection approaches use univariate (gene-by-gene) rankings of gene relevance and arbitrary thresholds to select the number of genes, can only be applied to two-class problems, and use gene selection ranking criteria unrelated to the classification algorithm. In contrast, random forest is a classification algorithm well suited for microarray data: it shows excellent performance even when most predictive variables are noise, can be used when the number of variables is much larger than the number of observations and in problems involving more than two classes, and returns measures of variable importance. Thus, it is important to understand the performance of random forest with microarray data and its possible use for gene selection. Results We investigate the use of random forest for classification of microarray data (including multi-class problems) and propose a new method of gene selection in classification problems based on random forest. Using simulated and nine microarray data sets we show that random forest has comparable performance to other classification methods, including DLDA, KNN, and SVM, and that the new gene selection procedure yields very small sets of genes (often smaller than alternative methods) while preserving predictive accuracy. Conclusion Because of its performance and features, random forest and gene selection using random forest should probably become part of the "standard tool-box" of methods for class prediction and gene selection with microarray data.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Conservatism of ecological niches in evolutionary time

            Theory predicts low niche differentiation between species over evolutionary time scales, but little empirical evidence is available. Reciprocal geographic predictions based on ecological niche models of sister taxon pairs of birds, mammals, and butterflies in southern Mexico indicate niche conservatism over several million years of independent evolution (between putative sister taxon pairs) but little conservatism at the level of families. Niche conservatism over such time scales indicates that speciation takes place in geographic, not ecological, dimensions and that ecological differences evolve later.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Climate change and evolution: disentangling environmental and genetic responses.

              Rapid climate change is likely to impose strong selection pressures on traits important for fitness, and therefore, microevolution in response to climate-mediated selection is potentially an important mechanism mitigating negative consequences of climate change. We reviewed the empirical evidence for recent microevolutionary responses to climate change in longitudinal studies emphasizing the following three perspectives emerging from the published data. First, although signatures of climate change are clearly visible in many ecological processes, similar examples of microevolutionary responses in literature are in fact very rare. Second, the quality of evidence for microevolutionary responses to climate change is far from satisfactory as the documented responses are often - if not typically - based on nongenetic data. We reinforce the view that it is as important to make the distinction between genetic (evolutionary) and phenotypic (includes a nongenetic, plastic component) responses clear, as it is to understand the relative roles of plasticity and genetics in adaptation to climate change. Third, in order to illustrate the difficulties and their potential ubiquity in detection of microevolution in response to natural selection, we reviewed the quantitative genetic studies on microevolutionary responses to natural selection in the context of long-term studies of vertebrates. The available evidence points to the overall conclusion that many responses perceived as adaptations to changing environmental conditions could be environmentally induced plastic responses rather than microevolutionary adaptations. Hence, clear-cut evidence indicating a significant role for evolutionary adaptation to ongoing climate warming is conspicuously scarce.
                Bookmark

                Author and article information

                Contributors
                murtuzatahiri@gmail.com
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                10 July 2020
                10 July 2020
                2020
                : 10
                : 11473
                Affiliations
                [1 ]ISNI 0000 0004 1937 0765, GRID grid.411340.3, Department of Wildlife Sciences, , Aligarh Muslim University, Uttar Pradesh, ; Aligarh, 202002 India
                [2 ]The Corbett Foundation, 81-88, Atlanta Building, Nariman Point, Mumbai, Maharashtra 400021 India
                Article
                68167
                10.1038/s41598-020-68167-z
                7351791
                32651414
                bf46c9e1-e6cd-4790-a42a-e84a16a37000
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 20 February 2020
                : 29 May 2020
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                ecology,climate-change ecology,ecological modelling
                Uncategorized
                ecology, climate-change ecology, ecological modelling

                Comments

                Comment on this article