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      Fungal diversity notes 1512–1610: taxonomic and phylogenetic contributions on genera and species of fungal taxa

      research-article
      1 , 2 , 1 , 2 , 3 , , 1 , 1 , 2 , 4 , 5 , 6 , 1 , 2 , 7 , 8 , 8 , 1 , 2 , 9 , 10 , 1 , 2 , 11 , 1 , 12 , 13 , 14 , 15 , 16 , 1 , 2 , 1 , 17 , 18 , 19 , 20 , 21 , 1 , 2 , 22 , 23 , 24 , 25 , 26 , 27 , 26 , 27 , 28 , 29 , 46 , 5 , 6 , 30 , 31 , 23 , 32 , 33 , 34 , 35 , 1 , 2 , 1 , 2 , 36 , 1 , 2 , 37 , 1 , 2 , 36 , 14 , 36 , 1 , 2 , 3 , 61 , 38 , 28 , 1 , 2 , 3 , 24 , 40 , 1 , 1 , 2 , 41 , 42 , 43 , 62 , 44 , 32 , 45 , 46 , 47 , 23 , 18 , 19 , 1 , 1 , 2 , 10 , 48 , 1 , 39 , 49 , 1 , 2 , 50 , 38 , 1 , 2 , 13 , 51 , 3 , 61 , 31 , 11 , 21 , 11 , 39 , 1 , 2 , 63 , 1 , 2 , 41 , 52 , 53 , 1 , 2 , 5 , 6 , 48 , 1 , 13 , 37 , 23 , 1 , 2 , 1 , 2 , 37 , 1 , 2 , 3 , 18 , 37 , 1 , 2 , 41 , 1 , 1 , 2 , 54 , 49 , 55 , 56 , 57 , 2 , 58 , 3 , 59 , 64 , 49 , 1 , 60 , 58 , 39 , 5 , 6 , 41 , 5 , 6 , 5 , 6 , 3 , 1 , 1 , 52 , 41 , 9 , 4
      Fungal Diversity
      Springer Netherlands
      59 New taxa, 39 New records, Ascomycota, Basidiomycota, Dothideomycetes, Lecanoromycetes, Leotiomycetes, Sordariomycetes, Ustilaginomycotina

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          Abstract

          This article is the 14th in the Fungal Diversity Notes series, wherein we report 98 taxa distributed in two phyla, seven classes, 26 orders and 50 families which are described and illustrated. Taxa in this study were collected from Australia, Brazil, Burkina Faso, Chile, China, Cyprus, Egypt, France, French Guiana, India, Indonesia, Italy, Laos, Mexico, Russia, Sri Lanka, Thailand, and Vietnam. There are 59 new taxa, 39 new hosts and new geographical distributions with one new combination. The 59 new species comprise Angustimassarina kunmingense, Asterina lopi, Asterina brigadeirensis, Bartalinia bidenticola, Bartalinia caryotae, Buellia pruinocalcarea, Coltricia insularis, Colletotrichum flexuosum, Colletotrichum thasutense, Coniochaeta caraganae, Coniothyrium yuccicola, Dematipyriforma aquatic, Dematipyriforma globispora, Dematipyriforma nilotica, Distoseptispora bambusicola, Fulvifomes jawadhuvensis, Fulvifomes malaiyanurensis, Fulvifomes thiruvannamalaiensis, Fusarium purpurea, Gerronema atrovirens, Gerronema flavum, Gerronema keralense, Gerronema kuruvense, Grammothele taiwanensis, Hongkongmyces changchunensis, Hypoxylon inaequale, Kirschsteiniothelia acutisporum, Kirschsteiniothelia crustaceum, Kirschsteiniothelia extensum, Kirschsteiniothelia septemseptatum, Kirschsteiniothelia spatiosum, Lecanora immersocalcarea, Lepiota subthailandica, Lindgomyces guizhouensis, Marthe asmius pallidoaurantiacus, Marasmius tangerinus, Neovaginatispora mangiferae, Pararamichloridium aquisubtropicum, Pestalotiopsis piraubensis, Phacidium chinaum, Phaeoisaria goiasensis, Phaeoseptum thailandicum, Pleurothecium aquisubtropicum, Pseudocercospora vernoniae, Pyrenophora verruculosa, Rhachomyces cruralis, Rhachomyces hyperommae, Rhachomyces magrinii, Rhachomyces platyprosophi, Rhizomarasmius cunninghamietorum, Skeletocutis cangshanensis, Skeletocutis subchrysella, Sporisorium anadelphiae-leptocomae, Tetraploa dashaoensis, Tomentella exiguelata, Tomentella fuscoaraneosa, Tricholomopsis lechatii, Vaginatispora flavispora and Wetmoreana blastidiocalcarea. The new combination is Torula sundara. The 39 new records on hosts and geographical distribution comprise Apiospora guiyangensis, Aplosporella artocarpi, Ascochyta medicaginicola, Astrocystis bambusicola, Athelia rolfsii, Bambusicola bambusae, Bipolaris luttrellii, Botryosphaeria dothidea, Chlorophyllum squamulosum, Colletotrichum aeschynomenes, Colletotrichum pandanicola, Coprinopsis cinerea, Corylicola italica, Curvularia alcornii, Curvularia senegalensis, Diaporthe foeniculina, Diaporthe longicolla, Diaporthe phaseolorum, Diatrypella quercina, Fusarium brachygibbosum, Helicoma aquaticum, Lepiota metulispora, Lepiota pongduadensis, Lepiota subvenenata, Melanconiella meridionalis, Monotosporella erecta, Nodulosphaeria digitalis, Palmiascoma gregariascomum, Periconia byssoides, Periconia cortaderiae, Pleopunctum ellipsoideum, Psilocybe keralensis, Scedosporium apiospermum, Scedosporium dehoogii, Scedosporium marina, Spegazzinia deightonii, Torula fici, Wiesneriomyces laurinus and Xylaria venosula. All these taxa are supported by morphological and multigene phylogenetic analyses. This article allows the researchers to publish fungal collections which are important for future studies. An updated, accurate and timely report of fungus-host and fungus-geography is important. We also provide an updated list of fungal taxa published in the previous fungal diversity notes. In this list, erroneous taxa and synonyms are marked and corrected accordingly.

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          Most cited references619

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

            The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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              Is Open Access

              RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

              Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analyses of large datasets under maximum likelihood. Since the last RAxML paper in 2006, it has been continuously maintained and extended to accommodate the increasingly growing input datasets and to serve the needs of the user community. Results: I present some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees. In addition, an up-to-date 50-page user manual covering all new RAxML options is available. Availability and implementation: The code is available under GNU GPL at https://github.com/stamatak/standard-RAxML. Contact: alexandros.stamatakis@h-its.org Supplementary information: Supplementary data are available at Bioinformatics online.
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                Author and article information

                Contributors
                kdhyde3@gmail.com
                Journal
                Fungal Divers
                Fungal Divers
                Fungal Diversity
                Springer Netherlands (Dordrecht )
                1560-2745
                1878-9129
                23 February 2023
                : 1-272
                Affiliations
                [1 ]GRID grid.411554.0, ISNI 0000 0001 0180 5757, Center of Excellence in Fungal Research, , Mae Fah Luang University, ; Chiang Rai, 57100 Thailand
                [2 ]GRID grid.411554.0, ISNI 0000 0001 0180 5757, School of Science, , Mae Fah Luang University, ; Chiang Rai, 57100 Thailand
                [3 ]GRID grid.449900.0, ISNI 0000 0004 1790 4030, Innovative Institute for Plant Health, , Zhongkai University of Agriculture and Engineering, ; Guangzhou, 510225 P.R. China
                [4 ]GRID grid.443382.a, ISNI 0000 0004 1804 268X, Department of Plant Pathology, College of Agriculture, , Guizhou University, ; Guiyang, 550025 Guizhou China
                [5 ]GRID grid.7132.7, ISNI 0000 0000 9039 7662, Research Center of Microbial Diversity and Sustainable Utilization, , Chiang Mai University, ; Chiang Mai, 50200 Thailand
                [6 ]GRID grid.7132.7, ISNI 0000 0000 9039 7662, Department of Biology, Faculty of Science, , Chiang Mai University, ; Chiang Mai, 50200 Thailand
                [7 ]GRID grid.494335.c, ISNI 0000 0004 0496 3728, Biotechnology and Ecology Institute, , Ministry of Agriculture and Forestry, ; P.O.Box: 811, Vientiane Capital, Lao PDR
                [8 ]GRID grid.412659.d, ISNI 0000 0004 0621 726X, Department of Botany and Microbiology, Faculty of Science, , Sohag University, ; Sohag, 82524 Egypt
                [9 ]GRID grid.418260.9, ISNI 0000 0004 0646 9053, Beijing Key Laboratory of Environment-Friendly Management on Fruit Diseases and Pests in North China, Institute of Plant Protection, , Beijing Academy of Agriculture and Forestry Sciences, ; Beijing, 100097 China
                [10 ]GRID grid.12799.34, ISNI 0000 0000 8338 6359, Departamento de Fitopatologia, , Universidade Federal de Viçosa, ; Viçosa, Minas Gerais Brazil
                [11 ]GRID grid.412352.3, ISNI 0000 0001 2163 5978, Laboratório de Botânica/Liquenologia, Instituto de Biociências, , Universidade Federal de Mato Grosso do Sul, ; Avenida Costa e Silva S/N, Bairro Universitário, Campo Grande, Mato Grosso do Sul CEP 79070-900 Brazil
                [12 ]GRID grid.440682.c, ISNI 0000 0001 1866 919X, College of Agriculture and Biological Sciences, , Dali University, ; Dali, 671003 Yunnan China
                [13 ]GRID grid.7132.7, ISNI 0000 0000 9039 7662, Department of Entomology and Plant Pathology, Faculty of Agriculture, , Chiang Mai University, ; Chiang Mai, 50200 Thailand
                [14 ]GRID grid.9026.d, ISNI 0000 0001 2287 2617, Institute of Plant Science and Microbiology, , Universität Hamburg, Organismic Botany and Mycology, ; Ohnhorststr. 18, 22609 Hamburg, Germany
                [15 ]GRID grid.7429.8, ISNI 0000000121866389, CEFE, CNRS, Univ. Montpellier, EPHE, IRD, INSERM, ; 1919, Route de Mende, 34293 Montpellier Cedex 5, France
                [16 ]GRID grid.411195.9, ISNI 0000 0001 2192 5801, Setor de Micologia, Departamento de Biociências e Tecnologia, Instituto de Patologia Tropical e Saúde Pública, , Universidade Federal de Goiás, ; Rua 235, S/N, Setor Universitário, Goiânia, GO CEP: 74605-050 Brazil
                [17 ]GRID grid.449735.8, ISNI 0000 0000 8534 737X, Division of Biological Sciences, College of Arts and Sciences, , University of the Philippines Visayas, ; 5023 Miagao, Iloilo Philippines
                [18 ]GRID grid.9227.e, ISNI 0000000119573309, CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, , Chinese Academy of Sciences, ; Shenyang, 110164 China
                [19 ]GRID grid.410726.6, ISNI 0000 0004 1797 8419, University of the Chinese Academy of Sciences, ; Beijing, 100049 China
                [20 ]GRID grid.412317.2, ISNI 0000 0001 2325 7288, Departamento de Ciências Biológicas, , Universidade Estadual de Feira de Santana, ; Av. Transnordestina, S/N – Novo Horizonte, Feira de Santana, BA 44036-900 Brazil
                [21 ]GRID grid.411227.3, ISNI 0000 0001 0670 7996, Departamento de Micologia Prof. Chaves Batista, , Universidade Federal de Pernambuco, ; Av. Prof. Moraes Rego, S/N, Centro de Biociências, Cidade Universitária, Recife, PE CEP: 50670-901 Brazil
                [22 ]GRID grid.28665.3f, ISNI 0000 0001 2287 1366, Biodiversity Research Center, , Academia Sinica, ; 128 Academia Road, Sec. 2, Nankang, 11529 Taipei Taiwan
                [23 ]GRID grid.503422.2, ISNI 0000 0001 2242 6780, Faculty of Pharmacy of Lille, , EA 4515 (LGCgE), Univ Lille, ; 59000 Lille, France
                [24 ]GRID grid.66741.32, ISNI 0000 0001 1456 856X, Institute of Microbiology, School of Ecology and Nature Conservation, , Beijing Forestry University, ; Beijing, 100083 China
                [25 ]GRID grid.500044.5, ISNI 0000 0001 1016 2925, Senckenberg Museum of Natural History Görlitz, ; PF 300 154, 02806 Görlitz, Germany
                [26 ]GRID grid.410344.6, ISNI 0000 0001 2097 3094, Institute of Biodiversity and Ecosystem Research, , Bulgarian Academy of Sciences, ; 2 Gagarin St., 1113 Sofia, Bulgaria
                [27 ]IUCN SSC Rusts and Smuts Specialist Group, Sofia, Bulgaria
                [28 ]GRID grid.464331.7, ISNI 0000 0001 0494 8796, Guizhou Institute of Biology, , Guizhou Academy of Sciences, ; Shanxi Road No. 1, Yunyan District, Guiyang, 550001 China
                [29 ]GRID grid.416288.1, ISNI 0000 0004 1767 3463, Virus Diagnostic and Research Lab, , Sri Venkateswara Institute of Medical Sciences, ; Tirupati, Andhra Pradesh 517501 India
                [30 ]GRID grid.411227.3, ISNI 0000 0001 0670 7996, Departamento de Micologia, , Universidade Federal de Pernambuco, ; Recife, Pernambuco Brazil
                [31 ]GRID grid.411507.6, ISNI 0000 0001 2287 8816, Center of Advanced Study in Botany, Institute of Sciences, , Banaras Hindu University, ; Varanasi, Uttar Pradesh 221005 India
                [32 ]GRID grid.267198.3, ISNI 0000 0001 1091 4496, Department of Botany, Faculty of Applied Sciences, , University of Sri Jayewardenepura, ; Nugegoda, Sri Lanka
                [33 ]GRID grid.411284.a, ISNI 0000 0004 4647 6936, Universidade Federal de Uberlândia, Instituto de Ciências Agrárias, ; Monte Carmelo, Minas Gerais Brazil
                [34 ]GRID grid.419209.7, ISNI 0000 0001 2110 259X, Laboratory of Mycology, Institute of Botany, , Academy of Sciences of Republic of Uzbekistan, ; 32 Durmon Yuli Street, Tashkent, Uzbekistan 100125
                [35 ]GRID grid.511016.2, AKFA University, ; 264 Milliy Bog Street, Tashkent, Uzbekistan 111221
                [36 ]GRID grid.413015.2, ISNI 0000 0004 0505 215X, Centre for Advanced Studies in Botany, , University of Madras, ; Guindy Campus, Chennai, 600025 India
                [37 ]GRID grid.410747.1, ISNI 0000 0004 1763 3680, Shandong Provincial Key Laboratory of Water and Soil Conservation and Environmental Protection, , College of Resources and Environment, Linyi University, ; West Side of North Section of Industrial Avenue, Linyi, 276000 China
                [38 ]GRID grid.158820.6, ISNI 0000 0004 1757 2611, University of L’Aquila Dept. MeSVA, sect. Environmental Sciences via Vetoio, ; 67100 Coppito, AQ Italy
                [39 ]GRID grid.464353.3, ISNI 0000 0000 9888 756X, Internationally Cooperative Research Center of China for New Germplasm Breeding of Edible Mushroom, , Jilin Agricultural University 38, ; Changchun, 130118 China
                [40 ]Limassol, Cyprus
                [41 ]GRID grid.484186.7, ISNI 0000 0004 4669 0297, School of Food and Pharmaceutical Engineering, , Guizhou Institute of Technology, ; Guiyang, 550003 China
                [42 ]GRID grid.412182.c, ISNI 0000 0001 2179 0636, Departamento de Tecnología Médica, Facultad de Ciencias de la Salud, , Universidad de Tarapacá, ; Sede Iquique, Av. Luis Emilio Recabarren, 2477 Iquique, Chile
                [43 ]GRID grid.462459.8, ISNI 0000 0001 2189 7185, Forest Pathology Department, , KSCSTE-Kerala Forest Research Institute, ; Peechi, Thrissur, Kerala 680653 India
                [44 ]GRID grid.54549.39, ISNI 0000 0004 0369 4060, School of Life Science and Technology, , University of Electronic Science and Technology of China, ; Chengdu, 611731 China
                [45 ]GRID grid.507618.d, ISNI 0000 0004 1793 7940, Real Jardín Botánico, RJB-CSIC, ; Plaza de Murillo 2, 28014 Madrid, Spain
                [46 ]GRID grid.412517.4, ISNI 0000 0001 2152 9956, Department of Biotechnology, , Pondicherry University, ; Kalapet, Pondicheryy 605014 India
                [47 ]GRID grid.462714.2, ISNI 0000 0000 9889 8728, Department of Botany, , Rajiv Gandhi University, ; Rono Hills, Doimukh, Papum Pare, Itanagar, Arunachal Pradesh 791112 India
                [48 ]GRID grid.444123.4, ISNI 0000 0004 0504 2015, Microbiology Program, Faculty of Science and Technology, , Pibulsongkram Rajabhat University, ; Phitsanulok, 65000 Thailand
                [49 ]GRID grid.9227.e, ISNI 0000000119573309, State Key Laboratory of Mycology, Institute of Microbiology, , Chinese Academy of Sciences, ; No. 3, 1st Beichen West Rd., Chaoyang District, Beijing, 100101 China
                [50 ]GRID grid.7763.5, ISNI 0000 0004 1755 3242, Department of Biomedical Sciences, , University of Cagliari, ; Cittadella Universitaria, 09042 Monserrato, Italy
                [51 ]GRID grid.412517.4, ISNI 0000 0001 2152 9956, Department of Biotechnology, School of Life Sciences, , Pondicherry University, ; R.V. Nagar, Kalapet, Pondicherry 605014 India
                [52 ]GRID grid.452648.9, ISNI 0000 0004 1762 8988, Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, , Qujing Normal University, ; Qujing, 655011 Yunnan China
                [53 ]GRID grid.267198.3, ISNI 0000 0001 1091 4496, Generics and Molecular Biology Unit, Faculty of Applied Sciences, , University of Sri Jayewardenepura, ; Gangodawila, 10250 Nugegoda Sri Lanka
                [54 ]Department of Plant Protection, Federal Research Centre the Subtropical Scientific Centre of the Russian Academy of Sciences, Jana Fabriciusa Str. 2/28, Krasnodar Region, Sochi, Russia 354002
                [55 ]A.M.B, Circolo Micologico ‘‘Giovanni Carini’’, C.P. 314, 25121 Brescia, Italy
                [56 ]A.M.B. Gruppo, Micologico Forlivese ‘‘Antonio Cicognani’’, via Roma 18, 47121 Forlì, Italy
                [57 ]Società per gli Studi Naturalistici Della Romagna, C.P. 143, 48012 Bagnacavallo, RA Italy
                [58 ]GRID grid.413039.c, ISNI 0000 0001 0805 7368, Department of Studies in Botany, , University of Mysore, ; Manasagangotri, Mysuru, Karnataka 570006 India
                [59 ]Ningbo Academy of Inspection and Quarantine, Ningbo, Zhejiang, 315012 PR China
                [60 ]GRID grid.56302.32, ISNI 0000 0004 1773 5396, Department of Botany and Microbiology, College of Science, , King Saud University, ; P.O. Box 2455, Riyadh, 11451 Saudi Arabia
                [61 ]GRID grid.449900.0, ISNI 0000 0004 1790 4030, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, , Zhongkai University of Agriculture and Engineering, ; Guangdong, 510225 China
                [62 ]GRID grid.464776.0, ISNI 0000 0001 0722 6289, Botanical Survey of India, Andaman and Nicobar Regional Centre, ; Haddo, Port Blair, South Andaman 744102 India
                [63 ]GRID grid.443382.a, ISNI 0000 0004 1804 268X, Engineering and Research Center for Southwest Biopharmaceutical Resource of National Education Ministry of China, , Guizhou University, ; Guiyang, 550025 Guizhou Province China
                [64 ]Ningbo Customs District, Ningbo, 315012 Zhejiang PR China
                Author notes

                Handling Editor: Jian-Kui Liu.

                Article
                513
                10.1007/s13225-022-00513-0
                9948003
                36852303
                beabf1ab-e526-4fe7-8296-7fcac35ffa44
                © The Author(s) under exclusive licence to Mushroom Research Foundation 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

                This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

                History
                : 12 September 2022
                : 6 December 2022
                Funding
                Funded by: National Research Council of Thailand
                Award ID: NRCT-TRG010
                Award ID: N42A650547
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100007275, Ministry of Science and Technology of Thailand;
                Award ID: 652A01003
                Award ID: DBG6280009
                Award ID: 652A01001
                Award ID: 652A16009
                Award ID: 652A01007
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100004154, Mae Fah Luang University;
                Award ID: 651B01010
                Award ID: 651A16029
                Award Recipient :
                Funded by: European Community Research Infrastructure Action
                Award ID: ES-TAF-6618
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100004663, Ministry of Science and Technology, Taiwan;
                Award ID: MOST 107-2621-B178-002-MY3
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100018555, Science and Technology Program of Guizhou Province;
                Award ID: 20192451-2
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100013843, Ministry of Innovative Development of the Republic of Uzbekistan;
                Award ID: AL 2021090820
                Award ID: MUK-2021-46
                Award Recipient :
                Funded by: Ministry of Earth Sciences
                Award ID: MOES/36/OOIS/Extra/40/2014/PC-IV
                Award Recipient :
                Funded by: University Grants Commission
                Award ID: F.15-1/2016-17/PDFWM-2015-17-UTT-32206
                Award Recipient :
                Funded by: Mae Fah Luang University grant
                Award ID: 651A16028
                Award Recipient :
                Categories
                Article

                59 new taxa,39 new records,ascomycota,basidiomycota,dothideomycetes,lecanoromycetes,leotiomycetes,sordariomycetes,ustilaginomycotina

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