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      Chara — a living sister to the land plants with pivotal enzymic toolkit for mannan and xylan remodelling

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      1 , 1 ,
      Physiologia Plantarum
      Blackwell Publishing Ltd

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          Abstract

          Land‐plant transglycosylases ‘cut‐and‐paste’ cell‐wall polysaccharides by endo‐transglycosylation (transglycanases) and exo‐transglycosylation (transglycosidases). Such enzymes may remodel the wall, adjusting extensibility and adhesion. Charophytes have cell‐wall polysaccharides that broadly resemble, but appreciably differ from land‐plants'. We investigated whether Chara vulgaris has wall‐restructuring enzymes mirroring those of land‐plants.

          Wall enzymes extracted from Chara were assayed in vitro for transglycosylase activities on various donor substrates — β‐(1→4)‐glucan‐based [xyloglucan and mixed‐linkage glucans (MLGs)], β‐(1→4)‐xylans and β‐(1→4)‐mannans — plus related acceptor substrates (tritium‐labelled oligosaccharides, XXXGol, Xyl 6‐ol and Man 6‐ol), thus 12 donor:acceptor permutations. Also, fluorescent oligosaccharides were incubated in situ with Chara, revealing endogenous enzyme action on endogenous (potentially novel) polysaccharides.

          Chara enzymes acted on the glucan‐based polysaccharides with [ 3H]XXXGol as acceptor substrate, demonstrating ‘glucan:glucan‐type’ transglucanases. Such activities were unexpected because Chara lacks biochemically detectable xyloglucan and MLG. With xylans as donor and [ 3H]Xyl 6‐ol (but not [ 3H]Man 6‐ol) as acceptor, high trans‐β‐xylanase activity was detected. With mannans as donor and either [ 3H]Man 6‐ol or [ 3H]Xyl 6‐ol as acceptor, we detected high levels of both mannan:mannan homo‐trans‐β‐mannanase and mannan:xylan hetero‐trans‐β‐mannanase activity, showing that Chara can not only ‘cut/paste’ these hemicelluloses by homo‐transglycosylation but also hetero‐transglycosylate them, forming mannan→xylan (but not xylan→mannan) hybrid hemicelluloses. In in‐situ assays, Chara walls attached endogenous polysaccharides to exogenous sulphorhodamine‐labelled Man 6‐ol, indicating transglycanase (possibly trans‐mannanase) action on endogenous polysaccharides.

          In conclusion, cell‐wall transglycosylases, comparable to but different from those of land‐plants, pre‐dated the divergence of the Charophyceae from its sister clade (Coleochaetophyceae/Zygnematophyceae/land‐plants). Thus, the ability to ‘cut/paste’ wall polysaccharides is an evolutionarily ancient streptophytic trait.

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          One thousand plant transcriptomes and the phylogenomics of green plants

          Green plants (Viridiplantae) include around 450,000–500,000 species 1,2 of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we sequenced the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta). Our analysis provides a robust phylogenomic framework for examining the evolution of green plants. Most inferred species relationships are well supported across multiple species tree and supermatrix analyses, but discordance among plastid and nuclear gene trees at a few important nodes highlights the complexity of plant genome evolution, including polyploidy, periods of rapid speciation, and extinction. Incomplete sorting of ancestral variation, polyploidization and massive expansions of gene families punctuate the evolutionary history of green plants. Notably, we find that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns. The increasing availability of high-quality plant genome sequences and advances in functional genomics are enabling research on genome evolution across the green tree of life.
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            The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

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              The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

              The evolutionary emergence of land plant body plans transformed the planet. However, our understanding of this formative episode is mired in the uncertainty associated with the phylogenetic relationships among bryophytes (hornworts, liverworts, and mosses) and tracheophytes (vascular plants). Here we attempt to clarify this problem by analyzing a large transcriptomic dataset with models that allow for compositional heterogeneity between sites. Zygnematophyceae is resolved as sister to land plants, but we obtain several distinct relationships between bryophytes and tracheophytes. Concatenated sequence analyses that can explicitly accommodate site-specific compositional heterogeneity give more support for a mosses-liverworts clade, "Setaphyta," as the sister to all other land plants, and weak support for hornworts as the sister to all other land plants. Bryophyte monophyly is supported by gene concatenation analyses using models explicitly accommodating lineage-specific compositional heterogeneity and analyses of gene trees. Both maximum-likelihood analyses that compare the fit of each gene tree to proposed species trees and Bayesian supertree estimation based on gene trees support bryophyte monophyly. Of the 15 distinct rooted relationships for embryophytes, we reject all but three hypotheses, which differ only in the position of hornworts. Our results imply that the ancestral embryophyte was more complex than has been envisaged based on topologies recognizing liverworts as the sister lineage to all other embryophytes. This requires many phenotypic character losses and transformations in the liverwort lineage, diminishes inconsistency between phylogeny and the fossil record, and prompts re-evaluation of the phylogenetic affinity of early land plant fossils, the majority of which are considered stem tracheophytes.
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                Author and article information

                Contributors
                s.fry@ed.ac.uk
                Journal
                Physiol Plant
                Physiol Plant
                10.1111/(ISSN)1399-3054
                PPL
                Physiologia Plantarum
                Blackwell Publishing Ltd (Oxford, UK )
                0031-9317
                1399-3054
                29 December 2023
                Jan-Feb 2024
                : 176
                : 1 ( doiID: 10.1111/ppl.v176.1 )
                : e14134
                Affiliations
                [ 1 ] The Edinburgh Cell Wall Group, Institute of Molecular Plant Sciences The University of Edinburgh Edinburgh UK
                Author notes
                [*] [* ] Correspondence

                Stephen C. Fry,

                Email: s.fry@ 123456ed.ac.uk

                Author information
                https://orcid.org/0000-0002-1820-4867
                Article
                PPL14134
                10.1111/ppl.14134
                10962555
                be84f03f-25de-475d-baba-3c68fa5e36c2
                © 2023 The Authors. Physiologia Plantarum published by John Wiley & Sons Ltd on behalf of Scandinavian Plant Physiology Society.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 06 December 2023
                : 01 November 2023
                : 09 December 2023
                Page count
                Figures: 10, Tables: 1, Pages: 23, Words: 15598
                Funding
                Funded by: Leverhulme Trust , doi 10.13039/501100000275;
                Award ID: F00158/CI
                Funded by: UK Biotechnology and Biological Sciences Research Council BBSRC (Impact Acceleration Account)
                Award ID: PIII057
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                January/February 2024
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.4.0 mode:remove_FC converted:25.03.2024

                Plant science & Botany
                Plant science & Botany

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