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      Mode of action of elasnin as biofilm formation eradicator of methicillin-resistant Staphylococcus aureus

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          Abstract

          Biofilm is made up of microbes and their extracellular matrix, making microorganisms highly tolerant, resistant, and resilient to a wide range of antimicrobials. Biofilm treatment with conventional antimicrobial agents can accelerate the evolution and spread of resistance due to the reduced efficacy and increased gene transfer and differentiation within biofilms. Therefore, effective biofilm-targeting compounds are currently highly sought after. In the present study, we identified elasnin as a potent biofilm-targeting compound against methicillin-resistant Staphylococcus aureus (MRSA). Elasnin effectively inhibited biofilm formation and especially eradicated the pre-formed biofilms of MRSA with low cytotoxicity and low risk of resistance development and retains its activity in a chronic wound biofilms model. A comprehensive mechanistic study using multi-omics and confocal and scanning electron microscopy revealed that elasnin induced the biofilm matrix destruction in a time-dependent manner and interfered with the cell division during the exponential phase, primarily by repressing the expression of virulence factors. Cells released from the elasnin-treated biofilms exhibited a defective appearance and became more sensitive to beta-lactam antibiotic penicillin G. Through gene overexpression and deletion assay, we discovered the key role of sarZ during elasnin-induced biofilm eradication. Overall, the present study identified elasnin as a potent biofilm eradicator against MRSA that harbors potential to be developed for biofilm removal and chronic wound treatment, and provided new insights into the molecular targets for biofilm eradication in MRSA.

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          Most cited references65

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          Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

          In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0550-8) contains supplementary material, which is available to authorized users.
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            Trimmomatic: a flexible trimmer for Illumina sequence data

            Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
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              Fast gapped-read alignment with Bowtie 2.

              As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                08 August 2022
                2022
                : 13
                : 967845
                Affiliations
                [1] 1Department of Ocean Science, The Hong Kong University of Science and Technology , Kowloon, Hong Kong, China
                [2] 2SZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University , Shenzhen, China
                [3] 3Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) , Guangzhou, China
                [4] 4Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology , Kowloon, Hong Kong SAR, China
                [5] 5Department of Chemistry, The University of Hong Kong , Pokfulam, Hong Kong SAR, China
                [6] 6The Swire Institute of Marine Science and Hong Kong Branch of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), The University of Hong Kong , Pokfulam, Hong Kong SAR, China
                [7] 7Institute for Advanced Study, Shenzhen University , Shenzhen, China
                Author notes

                Edited by: Huancai Lin, Sun Yat-sen University, China

                Reviewed by: Dariusz Nowicki, University of Gdansk, Poland; Appadurai Muthamil Iniyan, Manonmaniam Sundaranar University, India; Vijayakumar Sekar, Shandong University, China; Atte Von Wright, University of Eastern Finland, Finland

                *Correspondence: Pei-Yuan Qian, boqianpy@ 123456ust.hk

                This article was submitted to Antimicrobials, Resistance and Chemotherapy, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.967845
                9393526
                36003935
                bbf93da9-d3e0-47cc-83f8-72a85b687929
                Copyright © 2022 Long, Sulaiman, Xiao, Cheng, Wang, Malit, Wong, Liu, Li, Chen, Lam and Qian.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 June 2022
                : 20 July 2022
                Page count
                Figures: 7, Tables: 0, Equations: 0, References: 65, Pages: 16, Words: 11067
                Funding
                Funded by: China Ocean Mineral Resources Research and Development Association , doi 10.13039/501100010823;
                Award ID: 2018YFA0903200
                Award ID: GML2019ZD0409
                Award ID: COMRRDA17SC01
                Award ID: SMSEGL20SC01
                Award ID: C6026-19G-A
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                elasnin,biofilms,mrsa,resistance,antimicrobials,eradication,antibiofilm
                Microbiology & Virology
                elasnin, biofilms, mrsa, resistance, antimicrobials, eradication, antibiofilm

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