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      Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy

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          Abstract

          Intrahepatic cholestasis of pregnancy (ICP) is a female pregnancy-specific disorder that is characterized by increased serum bile acid and adverse fetal outcomes. The aetiology and mechanism of ICP are poorly understood; thus, existing therapies have been largely empiric. Here we show that the gut microbiome differed significantly between individuals with ICP and healthy pregnant women, and that colonization with gut microbiome from ICP patients was sufficient to induce cholestasis in mice. The gut microbiomes of ICP patients were primarily characterized by Bacteroides fragilis ( B. fragilis), and B. fragilis was able to promote ICP by inhibiting FXR signaling via its BSH activity to modulate bile acid metabolism. B. fragilis-mediated FXR signaling inhibition was responsible for excessive bile acid synthesis and interrupted hepatic bile excretion to ultimately promote the initiation of ICP. We propose that modulation of the gut microbiota-bile acid-FXR axis may be of value for ICP treatment.

          Abstract

          Intrahepatic cholestasis of pregnancy (ICP) is a liver disease that sometimes develops during pregnancy and is characterized by increased serum bile acid levels. Here the authors report that the gut microbiome species B. fragilis is enriched in patients with ICP and promotes ICP development in mice via inhibition of signalling though the bile acid receptor FXR.

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          Most cited references79

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          As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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            Fast and sensitive protein alignment using DIAMOND.

            The alignment of sequencing reads against a protein reference database is a major computational bottleneck in metagenomics and data-intensive evolutionary projects. Although recent tools offer improved performance over the gold standard BLASTX, they exhibit only a modest speedup or low sensitivity. We introduce DIAMOND, an open-source algorithm based on double indexing that is 20,000 times faster than BLASTX on short reads and has a similar degree of sensitivity.
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              Gut microbiota, metabolites and host immunity.

              The microbiota - the collection of microorganisms that live within and on all mammals - provides crucial signals for the development and function of the immune system. Increased availability of technologies that profile microbial communities is facilitating the entry of many immunologists into the evolving field of host-microbiota studies. The microbial communities, their metabolites and components are not only necessary for immune homeostasis, they also influence the susceptibility of the host to many immune-mediated diseases and disorders. In this Review, we discuss technological and computational approaches for investigating the microbiome, as well as recent advances in our understanding of host immunity and microbial mutualism with a focus on specific microbial metabolites, bacterial components and the immune system.
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                Author and article information

                Contributors
                2676832333@qq.com
                Yangshiming@tmmu.edu.cn
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                9 March 2023
                9 March 2023
                2023
                : 14
                : 1305
                Affiliations
                [1 ]GRID grid.417298.1, ISNI 0000 0004 1762 4928, Department of Gastroenterology, , Xinqiao Hospital, Army Medical University, ; Chongqing, China
                [2 ]GRID grid.452881.2, ISNI 0000 0004 0604 5998, Department of Obstetrics and Gynecology, , First People’s Hospital of Foshan, ; Foshan, Guangdong China
                [3 ]GRID grid.417298.1, ISNI 0000 0004 1762 4928, Department of Obstetrics and Gynecology, , Xinqiao Hospital, Army Medical University, ; Chongqing, China
                [4 ]GRID grid.410570.7, ISNI 0000 0004 1760 6682, Laboratory Medicine Center, Xinqiao Hospital, , Army Medical University, ; Chongqing, China
                [5 ]GRID grid.410570.7, ISNI 0000 0004 1760 6682, Department of Pathology, Xinqiao Hospital, , Army Medical University, ; Chongqing, China
                [6 ]GRID grid.410570.7, ISNI 0000 0004 1760 6682, College of Pharmacy, , Army Medical University, ; Chongqing, China
                [7 ]Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing, China
                [8 ]GRID grid.453222.0, ISNI 0000 0004 1757 9784, Chongqing Municipality Clinical Research Center for Gastroenterology, ; Chongqing, China
                Author information
                http://orcid.org/0000-0003-4089-5155
                http://orcid.org/0000-0002-7811-0854
                http://orcid.org/0000-0003-1645-6670
                http://orcid.org/0000-0001-9900-2150
                http://orcid.org/0000-0002-1161-5102
                http://orcid.org/0000-0002-7915-4568
                http://orcid.org/0000-0002-0000-4795
                Article
                36981
                10.1038/s41467-023-36981-4
                9998625
                36894566
                b95ad531-9332-489c-be66-9b501a894737
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 14 May 2022
                : 27 February 2023
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001809, National Natural Science Foundation of China (National Science Foundation of China);
                Award ID: 82030020
                Award Recipient :
                Categories
                Article
                Custom metadata
                © The Author(s) 2023

                Uncategorized
                microbiome,liver diseases
                Uncategorized
                microbiome, liver diseases

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