37
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Predictive genetic plan for a captive population of the Chinese goral ( Naemorhedus griseus) and prescriptive action for ex situ and in situ conservation management in Thailand

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Captive breeding programs for endangered species can increase population numbers for eventual reintroduction to the wild. Captive populations are typically small and isolated, which results in inbreeding and reduction of genetic variability, and may lead to an increased risk of extinction. The Omkoi Wildlife Breeding Center maintains the only Thai captive Chinese goral ( Naemorhedus griseus) population, and has plans to reintroduce individuals into natural isolated populations. Genetic variability was assessed within the captive population using microsatellite data. Although no bottleneck was observed, genetic variability was low (allelic richness = 7.091 ± 0.756, H e = 0.455 ± 0.219; H e < H o) and 11 microsatellite loci were informative that likely reflect inbreeding. Estimates of small effective population size and limited numbers of founders, combined with wild-born individuals within subpopulations, tend to cause reduction of genetic variability over time in captive programs. This leads to low reproductive fitness and limited ability to adapt to environmental change, thereby increasing the risk of extinction. Management of captive populations as evolutionarily significant units with diverse genetic backgrounds offers an effective strategy for population recovery. Relocation of individuals among subpopulations, or introduction of newly captured wild individuals into the captive program will help to ensure the future security of Chinese goral. Implications for future conservation actions for the species are discussed herein.

          Related collections

          Most cited references41

          • Record: found
          • Abstract: found
          • Article: not found

          Detection of reduction in population size using data from microsatellite loci.

          We demonstrate that the mean ratio of the number of alleles to the range in allele size, which we term M, calculated from a population sample of microsatellite loci, can be used to detect reductions in population size. Using simulations, we show that, for a general class of mutation models, the value of M decreases when a population is reduced in size. The magnitude of the decrease is positively correlated with the severity and duration of the reduction in size. We also find that the rate of recovery of M following a reduction in size is positively correlated with post-reduction population size, but that recovery occurs in both small and large populations. This indicates that M can distinguish between populations that have been recently reduced in size and those which have been small for a long time. We employ M to develop a statistical test for recent reductions in population size that can detect such changes for more than 100 generations with the post-reduction demographic scenarios we examine. We also compute M for a variety of populations and species using microsatellite data collected from the literature. We find that the value of M consistently predicts the reported demographic history for these populations. This method, and others like it, promises to be an important tool for the conservation and management of populations that are in need of intervention or recovery.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            COANCESTRY: a program for simulating, estimating and analysing relatedness and inbreeding coefficients.

            The software package COANCESTRY implements seven relatedness estimators and three inbreeding estimators to estimate relatedness and inbreeding coefficients from multilocus genotype data. Two likelihood estimators that allow for inbred individuals and account for genotyping errors are for the first time included in this user-friendly program for PCs running Windows operating system. A simulation module is built in the program to simulate multilocus genotype data of individuals with a predefined relationship, and to compare the estimators and the simulated relatedness values to facilitate the selection of the best estimator in a particular situation. Bootstrapping and permutations are used to obtain the 95% confidence intervals of each relatedness or inbreeding estimate, and to test the difference in averages between groups. © 2010 Blackwell Publishing Ltd.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Estimation of pairwise relatedness with molecular markers.

              Applications of quantitative genetics and conservation genetics often require measures of pairwise relationships between individuals, which, in the absence of known pedigree structure, can be estimated only by use of molecular markers. Here we introduce methods for the joint estimation of the two-gene and four-gene coefficients of relationship from data on codominant molecular markers in randomly mating populations. In a comparison with other published estimators of pairwise relatedness, we find these new "regression" estimators to be computationally simpler and to yield similar or lower sampling variances, particularly when many loci are used or when loci are hypervariable. Two examples are given in which the new estimators are applied to natural populations, one that reveals isolation-by-distance in an annual plant and the other that suggests a genetic basis for a coat color polymorphism in bears.
                Bookmark

                Author and article information

                Contributors
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Writing – review & editing
                Role: Writing – review & editing
                Role: ResourcesRole: Writing – review & editing
                Role: ResourcesRole: Writing – review & editing
                Role: ResourcesRole: Writing – review & editing
                Role: ResourcesRole: Writing – review & editing
                Role: ResourcesRole: Writing – review & editing
                Role: Writing – review & editing
                Role: Funding acquisitionRole: InvestigationRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                4 June 2020
                2020
                : 15
                : 6
                : e0234064
                Affiliations
                [1 ] Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, Thailand
                [2 ] Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, Chatuchak, Bangkok, Thailand
                [3 ] Department of Fishery Biology, Faculty of Fisheries, Kasetsart University, Bangkok, Thailand
                [4 ] Deparment of National Park, Wildlife and Plant Conservation, Ministry of Natural Resources and Environment, Bangkok, Thailand
                [5 ] Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University, Kasetsart University, Bangkok, Thailand (CASTNAR, NRU-KU, Thailand)
                [6 ] Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok, Thailand
                [7 ] Amphibian Research Center, Hiroshima University, Kagamiyama, Higashihiroshima, Japan
                Sichuan University, CHINA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-5985-7258
                Article
                PONE-D-20-06771
                10.1371/journal.pone.0234064
                7272075
                32497115
                b95a0f2e-aa81-4971-a0c8-12b5ca495eaa
                © 2020 Jangtarwan et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 14 March 2020
                : 17 May 2020
                Page count
                Figures: 3, Tables: 2, Pages: 15
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100004704, National Research Council of Thailand;
                Award ID: 0404639
                Award Recipient :
                Funded by: Undergraduate Research Matching Fund
                Award ID: 6501.0901/0775
                Award Recipient :
                Funded by: Undergraduate Research Matching Fund
                Award ID: 6501.0901/0775
                Award Recipient :
                Funded by: Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University
                Award ID: CASTNAR, NRU-KU, Thailand
                Award Recipient :
                Funded by: Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University
                Award ID: CASTNAR, NRU-KU, Thailand
                Award Recipient :
                Funded by: Center of Excellence on Agricultural Biotechnology, Science and Technology Postgraduate Education and Research Development Office, Office of Higher Education Commission, Ministry of Education
                Award ID: AG-BIO/PERDO-CHE
                Award Recipient :
                This study was financially supported by a Government Budget Grant from the National Research Council of Thailand (No. 0404639) awarded to KJ, NS, WC, NM, SP, PD and KS, an Undergraduate Research Matching Fund (6501.0901/0775) from the Faculty of Science, Kasetsart University awarded to PK and KS, the Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University (CASTNAR, NRU-KU, Thailand) awarded to PD and KS, and the Center of Excellence on Agricultural Biotechnology, Science and Technology Postgraduate Education and Research Development Office, Office of Higher Education Commission, Ministry of Education (AG-BIO/PERDO-CHE) awarded to KS. The funding agencies did not play a role in the design of the study or in the collection, analysis, and interpretation of data, or in writing the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Conservation Biology
                Conservation Genetics
                Ecology and Environmental Sciences
                Conservation Science
                Conservation Biology
                Conservation Genetics
                Biology and Life Sciences
                Genetics
                Conservation Genetics
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Biology and Life Sciences
                Genetics
                Population Genetics
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Genetic Polymorphism
                Biology and Life Sciences
                Genetics
                Population Genetics
                Genetic Polymorphism
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Genetic Polymorphism
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Animal Types
                Wildlife
                Biology and Life Sciences
                Zoology
                Animal Types
                Wildlife
                Biology and Life Sciences
                Genetics
                Heredity
                Inbreeding
                Ecology and Environmental Sciences
                Conservation Science
                Biology and Life Sciences
                Genetics
                Heredity
                Heterozygosity
                People and Places
                Geographical Locations
                Asia
                Thailand
                Custom metadata
                All relevant data are within the manuscript and its Supporting Information files.

                Uncategorized
                Uncategorized

                Comments

                Comment on this article