1
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The yeast RAVE (Regulator of H +-ATPase of Vacuolar and Endosomal membranes) complex and Rabconnectin-3 complexes of higher eukaryotes regulate acidification of organelles such as lysosomes and endosomes by catalyzing V-ATPase assembly. V-ATPases are highly conserved proton pumps consisting of a peripheral V 1 subcomplex that contains the sites of ATP hydrolysis, attached to an integral membrane V o subcomplex that forms the transmembrane proton pore. Reversible disassembly of the V-ATPase is a conserved regulatory mechanism that occurs in response to multiple signals, serving to tune ATPase activity and compartment acidification to changing extracellular conditions. Signals such as glucose deprivation can induce release of V 1 from V o, which inhibits both ATPase activity and proton transport. Reassembly of V 1 with V o restores ATP-driven proton transport, but requires assistance of the RAVE or Rabconnectin-3 complexes. Glucose deprivation triggers V-ATPase disassembly in yeast and is accompanied by binding of RAVE to V 1 subcomplexes. Upon glucose readdition, RAVE catalyzes both recruitment of V 1 to the vacuolar membrane and its reassembly with V o. The RAVE complex can be recruited to the vacuolar membrane by glucose in the absence of V 1 subunits, indicating that the interaction between RAVE and the V o membrane domain is glucose-sensitive. Yeast RAVE complexes also distinguish between organelle-specific isoforms of the V o a-subunit and thus regulate distinct V-ATPase subpopulations. Rabconnectin-3 complexes in higher eukaryotes appear to be functionally equivalent to yeast RAVE. Originally isolated as a two-subunit complex from rat brain, the Rabconnectin-3 complex has regions of homology with yeast RAVE and was shown to interact with V-ATPase subunits and promote endosomal acidification. Current understanding of the structure and function of RAVE and Rabconnectin-3 complexes, their interactions with the V-ATPase, their role in signal-dependent modulation of organelle acidification, and their impact on downstream pathways will be discussed.

          Related collections

          Most cited references104

          • Record: found
          • Abstract: found
          • Article: not found

          The Phyre2 web portal for protein modeling, prediction and analysis.

          Phyre2 is a suite of tools available on the web to predict and analyze protein structure, function and mutations. The focus of Phyre2 is to provide biologists with a simple and intuitive interface to state-of-the-art protein bioinformatics tools. Phyre2 replaces Phyre, the original version of the server for which we previously published a paper in Nature Protocols. In this updated protocol, we describe Phyre2, which uses advanced remote homology detection methods to build 3D models, predict ligand binding sites and analyze the effect of amino acid variants (e.g., nonsynonymous SNPs (nsSNPs)) for a user's protein sequence. Users are guided through results by a simple interface at a level of detail they determine. This protocol will guide users from submitting a protein sequence to interpreting the secondary and tertiary structure of their models, their domain composition and model quality. A range of additional available tools is described to find a protein structure in a genome, to submit large number of sequences at once and to automatically run weekly searches for proteins that are difficult to model. The server is available at http://www.sbg.bio.ic.ac.uk/phyre2. A typical structure prediction will be returned between 30 min and 2 h after submission.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found
            Is Open Access

            Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.

            Global classification of the human proteins with regards to spatial expression patterns across organs and tissues is important for studies of human biology and disease. Here, we used a quantitative transcriptomics analysis (RNA-Seq) to classify the tissue-specific expression of genes across a representative set of all major human organs and tissues and combined this analysis with antibody-based profiling of the same tissues. To present the data, we launch a new version of the Human Protein Atlas that integrates RNA and protein expression data corresponding to ∼80% of the human protein-coding genes with access to the primary data for both the RNA and the protein analysis on an individual gene level. We present a classification of all human protein-coding genes with regards to tissue-specificity and spatial expression pattern. The integrative human expression map can be used as a starting point to explore the molecular constituents of the human body.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Sensors and regulators of intracellular pH.

              Protons dictate the charge and structure of macromolecules and are used as energy currency by eukaryotic cells. The unique function of individual organelles therefore depends on the establishment and stringent maintenance of a distinct pH. This, in turn, requires a means to sense the prevailing pH and to respond to deviations from the norm with effective mechanisms to transport, produce or consume proton equivalents. A dynamic, finely tuned balance between proton-extruding and proton-importing processes underlies pH homeostasis not only in the cytosol, but in other cellular compartments as well.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Cell Dev Biol
                Front Cell Dev Biol
                Front. Cell Dev. Biol.
                Frontiers in Cell and Developmental Biology
                Frontiers Media S.A.
                2296-634X
                24 June 2021
                2021
                : 9
                : 698190
                Affiliations
                Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University , Syracuse, NY, United States
                Author notes

                Edited by: David A. Tumbarello, University of Southampton, United Kingdom

                Reviewed by: Mayumi Nakanishi-Matsui, Iwate Medical University, Japan; Cecilia Bucci, University of Salento, Italy; Haruko Okamoto, University of Sussex, United Kingdom

                *Correspondence: Patricia M. Kane, kanepm@ 123456upstate.edu

                This article was submitted to Signaling, a section of the journal Frontiers in Cell and Developmental Biology

                Article
                10.3389/fcell.2021.698190
                8264551
                34249946
                b8bfd5a8-1895-4416-9209-c55ef7f8611d
                Copyright © 2021 Jaskolka, Winkley and Kane.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 20 April 2021
                : 28 May 2021
                Page count
                Figures: 4, Tables: 0, Equations: 0, References: 104, Pages: 14, Words: 0
                Funding
                Funded by: National Institutes of Health 10.13039/100000002
                Categories
                Cell and Developmental Biology
                Review

                organelle acidification,rabconnectin-3,vacuole,endosome and lysosome,v-atpase,rave = regulator of h+-atpase of vacuoles and endosomes,dmxl2,wdr7

                Comments

                Comment on this article