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      Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves

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          Abstract

          Background

          Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological field to describe the degree of water saturation in plant leaves. Obtaining RWC implies a cumbersome and destructive process that can introduce artefacts and cannot be determined instantaneously.

          Results

          Here, we present a method for the estimation of RWC in plant leaves from non-contact resonant ultrasound spectroscopy (NC-RUS) data. This technique enables to collect transmission coefficient in a [0.15–1.6] MHz frequency range from plant leaves in a non-invasive, non-destructive and rapid way. Two different approaches for the proposed method are evaluated: convolutional neural networks (CNN) and random forest (RF). While CNN takes the entire ultrasonic spectra acquired from the leaves, RF only uses four relevant parameters resulted from the transmission coefficient data. Both methods were tested successfully in Viburnum tinus leaf samples with Pearson’s correlations between 0.92 and 0.84.

          Conclusions

          This study showed that the combination of NC-RUS technique with deep learning algorithms is a robust tool for the instantaneous, accurate and non-destructive determination of RWC in plant leaves.

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          Author and article information

          Contributors
          lola.farinas@gmail.com
          Journal
          Plant Methods
          Plant Methods
          Plant Methods
          BioMed Central (London )
          1746-4811
          7 November 2019
          7 November 2019
          2019
          : 15
          : 128
          Affiliations
          [1 ]ISNI 0000 0004 1770 5832, GRID grid.157927.f, Department of Food Technology, , Universitat Politècnica de València (UPV), ; Valencia, Spain
          [2 ]ISNI 0000 0001 0125 7682, GRID grid.467824.b, Cellomics Unit, Cell & Developmental Biology Area, , Centro Nacional de Investigaciones Cardiovasculares (CNIC), ; Madrid, Spain
          [3 ]ISNI 0000 0004 0546 8112, GRID grid.418268.1, Unidad de Recursos Naturales, , Centro de Investigación y Tecnología Agroalimentaria Gobierno de Aragón (CITA), ; Zaragoza, Spain
          [4 ]ISNI 0000 0001 2183 4846, GRID grid.4711.3, Sensors and Ultrasonic Technologies Department, Information and Physics Technologies Institute, , Spanish National Research Council (CSIC), ; Madrid, Spain
          Author information
          http://orcid.org/0000-0001-6370-1283
          Article
          511
          10.1186/s13007-019-0511-z
          6836334
          31709000
          b8226c20-cd77-4ebe-87b0-f4c7ec597050
          © The Author(s) 2019

          Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

          History
          : 28 June 2019
          : 25 October 2019
          Funding
          Funded by: FundRef http://dx.doi.org/10.13039/501100011033, Agencia Estatal de Investigación;
          Award ID: DPI2016-78876-R-AEI/FEDER
          Award ID: UE
          Award Recipient :
          Funded by: FundRef http://dx.doi.org/10.13039/100007652, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria;
          Award ID: RTA2015-00054-C02-01 (Gobierno de Aragón
          Award ID: H09_17R research group)
          Award ID: DOC INIA-CCAA (ESF)
          Award Recipient :
          Funded by: FundRef http://dx.doi.org/10.13039/501100011596, Conselleria d'Educació, Investigació, Cultura i Esport;
          Award ID: APOSTD/2018/203 (ESF)
          Award Recipient :
          Categories
          Research
          Custom metadata
          © The Author(s) 2019

          Plant science & Botany
          rwc,ultrasounds,machine learning,plant leaves,irrigation,nc-rus
          Plant science & Botany
          rwc, ultrasounds, machine learning, plant leaves, irrigation, nc-rus

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