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      Back into the wild—Apply untapped genetic diversity of wild relatives for crop improvement

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          Abstract

          Deleterious effects of climate change and human activities, as well as diverse environmental stresses, present critical challenges to food production and the maintenance of natural diversity. These challenges may be met by the development of novel crop varieties with increased biotic or abiotic resistance that enables them to thrive in marginal lands. However, considering the diverse interactions between crops and environmental factors, it is surprising that evolutionary principles have been underexploited in addressing these food and environmental challenges. Compared with domesticated cultivars, crop wild relatives ( CWRs) have been challenged in natural environments for thousands of years and maintain a much higher level of genetic diversity. In this review, we highlight the significance of CWRs for crop improvement by providing examples of CWRs that have been used to increase biotic and abiotic stress resistance/tolerance and overall yield in various crop species. We also discuss the surge of advanced biotechnologies, such as next‐generation sequencing technologies and omics, with particular emphasis on how they have facilitated gene discovery in CWRs. We end the review by discussing the available resources and conservation of CWRs, including the urgent need for CWR prioritization and collection to ensure continuous crop improvement for food sustainability.

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          Most cited references131

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          Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection.

          We report a large-scale analysis of the patterns of genome-wide genetic variation in soybeans. We re-sequenced a total of 17 wild and 14 cultivated soybean genomes to an average of approximately ×5 depth and >90% coverage using the Illumina Genome Analyzer II platform. We compared the patterns of genetic variation between wild and cultivated soybeans and identified higher allelic diversity in wild soybeans. We identified a high level of linkage disequilibrium in the soybean genome, suggesting that marker-assisted breeding of soybean will be less challenging than map-based cloning. We report linkage disequilibrium block location and distribution, and we identified a set of 205,614 tag SNPs that may be useful for QTL mapping and association studies. The data here provide a valuable resource for the analysis of wild soybeans and to facilitate future breeding and quantitative trait analysis.
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            Increasing homogeneity in global food supplies and the implications for food security.

            The narrowing of diversity in crop species contributing to the world's food supplies has been considered a potential threat to food security. However, changes in this diversity have not been quantified globally. We assess trends over the past 50 y in the richness, abundance, and composition of crop species in national food supplies worldwide. Over this period, national per capita food supplies expanded in total quantities of food calories, protein, fat, and weight, with increased proportions of those quantities sourcing from energy-dense foods. At the same time the number of measured crop commodities contributing to national food supplies increased, the relative contribution of these commodities within these supplies became more even, and the dominance of the most significant commodities decreased. As a consequence, national food supplies worldwide became more similar in composition, correlated particularly with an increased supply of a number of globally important cereal and oil crops, and a decline of other cereal, oil, and starchy root species. The increase in homogeneity worldwide portends the establishment of a global standard food supply, which is relatively species-rich in regard to measured crops at the national level, but species-poor globally. These changes in food supplies heighten interdependence among countries in regard to availability and access to these food sources and the genetic resources supporting their production, and give further urgency to nutrition development priorities aimed at bolstering food security.
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              Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops.

              Domesticated food crops are derived from a phylogenetically diverse assemblage of wild ancestors through artificial selection for different traits. Our understanding of domestication, however, is based upon a subset of well-studied 'model' crops, many of them from the Poaceae family. Here, we investigate domestication traits and theories using a broader range of crops. We reviewed domestication information (e.g. center of domestication, plant traits, wild ancestors, domestication dates, domestication traits, early and current uses) for 203 major and minor food crops. Compiled data were used to test classic and contemporary theories in crop domestication. Many typical features of domestication associated with model crops, including changes in ploidy level, loss of shattering, multiple origins, and domestication outside the native range, are less common within this broader dataset. In addition, there are strong spatial and temporal trends in our dataset. The overall time required to domesticate a species has decreased since the earliest domestication events. The frequencies of some domestication syndrome traits (e.g. nonshattering) have decreased over time, while others (e.g. changes to secondary metabolites) have increased. We discuss the influences of the ecological, evolutionary, cultural and technological factors that make domestication a dynamic and ongoing process. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.
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                Author and article information

                Contributors
                bsong5@uncc.edu
                Journal
                Evol Appl
                Evol Appl
                10.1111/(ISSN)1752-4571
                EVA
                Evolutionary Applications
                John Wiley and Sons Inc. (Hoboken )
                1752-4571
                10 December 2016
                January 2017
                : 10
                : 1 ( doiID: 10.1111/eva.2017.10.issue-1 )
                : 5-24
                Affiliations
                [ 1 ] Department of Biological SciencesUniversity of North Carolina at Charlotte Charlotte NCUSA
                [ 2 ] The Institute for Plant Sciences Israel Plant Gene BankAgricultural Research Organization Bet DaganIsrael
                Author notes
                [*] [* ] Correspondence

                Bao‐Hua Song, Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, USA.

                Email: bsong5@ 123456uncc.edu

                Article
                EVA12434
                10.1111/eva.12434
                5192947
                28035232
                b5f150e7-83fb-4353-bbf0-b804c23ab85c
                © 2016 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 01 July 2015
                : 07 September 2016
                Page count
                Figures: 2, Tables: 4, Pages: 20, Words: 19846
                Funding
                Funded by: North Carolina Biotechnology Center
                Award ID: 2014‐CFG‐8005
                Funded by: The National Institute Of General Medical Sciences of the National Institutes of Health
                Award ID: R15GM122029
                Funded by: Charlotte Research Institute
                Award ID: 1603‐020
                Funded by: North Carolina Biotechnology Collaborative
                Funded by: Kenan Institute for Engineering, Technology, and Science at North Carolina State University
                Funded by: University of North Carolina at Charlotte
                Categories
                Reviews and Syntheses
                Reviews and Syntheses
                Custom metadata
                2.0
                eva12434
                January 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.0.0 mode:remove_FC converted:25.12.2016

                Evolutionary Biology
                advanced biotechnology,climate change,conservation,crop wild relatives,environmental stresses,food security

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