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      ZmTE1 promotes plant height by regulating intercalary meristem formation and internode cell elongation in maize

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          Summary

          Maize height is determined by the number of nodes and the length of internodes. Node number is driven by intercalary meristem formation and internode length by intercalary cell elongation, respectively. However, mechanisms regulating establishment of nodes and internode growth are unclear. We screened EMS‐induced maize mutants and identified a dwarf mutant zm66, linked to a single base change in TERMINAL EAR 1 ( ZmTE1). Detailed phenotypic analysis revealed that zm66 ( zmte1‐2) has shorter internodes and increased node numbers, caused by decreased cell elongation and disordered intercalary meristem formation, respectively. Transcriptome analysis showed that auxin signalling genes are also dysregulated in zmte1‐2, as are cell elongation and cell cycle‐related genes. This argues that ZmTE1 regulates auxin signalling, cell division, and cell elongation. We found that the ZmWEE1 kinase phosphorylates ZmTE1, thus confining it to the nucleus and probably reducing cell division. In contrast, the ZmPP2Ac‐2 phosphatase promotes dephosphorylation and cytoplasmic localization of ZmTE1, as well as cell division. Taken together, ZmTE1, a key regulator of plant height, is responsible for maintaining organized formation of internode meristems and rapid cell elongation. ZmWEE1 and ZmPP2Ac‐2 might balance ZmTE1 activity, controlling cell division and elongation to maintain normal maize growth.

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          QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.

          The majority of agronomically important crop traits are quantitative, meaning that they are controlled by multiple genes each with a small effect (quantitative trait loci, QTLs). Mapping and isolation of QTLs is important for efficient crop breeding by marker-assisted selection (MAS) and for a better understanding of the molecular mechanisms underlying the traits. However, since it requires the development and selection of DNA markers for linkage analysis, QTL analysis has been time-consuming and labor-intensive. Here we report the rapid identification of plant QTLs by whole-genome resequencing of DNAs from two populations each composed of 20-50 individuals showing extreme opposite trait values for a given phenotype in a segregating progeny. We propose to name this approach QTL-seq as applied to plant species. We applied QTL-seq to rice recombinant inbred lines and F2 populations and successfully identified QTLs for important agronomic traits, such as partial resistance to the fungal rice blast disease and seedling vigor. Simulation study showed that QTL-seq is able to detect QTLs over wide ranges of experimental variables, and the method can be generally applied in population genomics studies to rapidly identify genomic regions that underwent artificial or natural selective sweeps. © 2013 The Authors The Plant Journal © 2013 Blackwell Publishing Ltd.
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            Genome sequencing reveals agronomically important loci in rice using MutMap.

            The majority of agronomic traits are controlled by multiple genes that cause minor phenotypic effects, making the identification of these genes difficult. Here we introduce MutMap, a method based on whole-genome resequencing of pooled DNA from a segregating population of plants that show a useful phenotype. In MutMap, a mutant is crossed directly to the original wild-type line and then selfed, allowing unequivocal segregation in second filial generation (F(2)) progeny of subtle phenotypic differences. This approach is particularly amenable to crop species because it minimizes the number of genetic crosses (n = 1 or 0) and mutant F(2) progeny that are required. We applied MutMap to seven mutants of a Japanese elite rice cultivar and identified the unique genomic positions most probable to harbor mutations causing pale green leaves and semidwarfism, an agronomically relevant trait. These results show that MutMap can accelerate the genetic improvement of rice and other crop plants.
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              SAUR Inhibition of PP2C-D Phosphatases Activates Plasma Membrane H+-ATPases to Promote Cell Expansion in Arabidopsis.

              The plant hormone auxin promotes cell expansion. Forty years ago, the acid growth theory was proposed, whereby auxin promotes proton efflux to acidify the apoplast and facilitate the uptake of solutes and water to drive plant cell expansion. However, the underlying molecular and genetic bases of this process remain unclear. We have previously shown that the SAUR19-24 subfamily of auxin-induced SMALL AUXIN UP-RNA (SAUR) genes promotes cell expansion. Here, we demonstrate that SAUR proteins provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases) in Arabidopsis thaliana. Plants overexpressing stabilized SAUR19 fusion proteins exhibit increased PM H(+)-ATPase activity, and the increased growth phenotypes conferred by SAUR19 overexpression are dependent upon normal PM H(+)-ATPase function. We find that SAUR19 stimulates PM H(+)-ATPase activity by promoting phosphorylation of the C-terminal autoinhibitory domain. Additionally, we identify a regulatory mechanism by which SAUR19 modulates PM H(+)-ATPase phosphorylation status. SAUR19 as well as additional SAUR proteins interact with the PP2C-D subfamily of type 2C protein phosphatases. We demonstrate that these phosphatases are inhibited upon SAUR binding, act antagonistically to SAURs in vivo, can physically interact with PM H(+)-ATPases, and negatively regulate PM H(+)-ATPase activity. Our findings provide a molecular framework for elucidating auxin-mediated control of plant cell expansion. © 2014 American Society of Plant Biologists. All rights reserved.
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                Author and article information

                Contributors
                cuilingli@sdu.edu.cn
                dingzhaojun@sdu.edu.cn
                Journal
                Plant Biotechnol J
                Plant Biotechnol J
                10.1111/(ISSN)1467-7652
                PBI
                Plant Biotechnology Journal
                John Wiley and Sons Inc. (Hoboken )
                1467-7644
                1467-7652
                09 November 2021
                March 2022
                : 20
                : 3 ( doiID: 10.1111/pbi.v20.3 )
                : 526-537
                Affiliations
                [ 1 ] The Key Laboratory of Plant Development and Environmental Adaptation Biology Ministry of Education College of Life Sciences Shandong University Qingdao Shandong China
                [ 2 ] School of Life Science Anhui Agricultural University Hefei Anhui China
                [ 3 ] Maize Research Institute Shandong Academy of Agricultural Sciences/National Engineering Laboratory of Wheat and Maize/Key Laboratory of Biology and Genetic Improvement of Maize in Northern Yellow‐huai River Plain Ministry of Agriculture Jinan China
                [ 4 ] College of Agronomy Qingdao Agricultural University Qingdao China
                [ 5 ] State Key Laboratory of Crop Biology College of Life Sciences Shandong Agricultural University Tai'an China
                Author notes
                [*] [* ] * Correspondence: (Tel 086‐532‐58630889; email cuilingli@ 123456sdu.edu.cn ) (C.L.), and (Tel 086‐532‐58630889; email dingzhaojun@ 123456sdu.edu.cn (Z.D.)

                Author information
                https://orcid.org/0000-0003-0218-5136
                Article
                PBI13734
                10.1111/pbi.13734
                8882779
                34687251
                b5c4de48-8efa-46dd-8422-504223088785
                © 2021 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 07 October 2021
                : 28 August 2021
                : 08 October 2021
                Page count
                Figures: 7, Tables: 0, Pages: 537, Words: 8681
                Funding
                Funded by: Qingdao's Leading Technology Innovator Project
                Award ID: 19‐3‐2‐1‐2hc
                Funded by: Shandong Province Natural Science Foundation Major Basic Research Program , doi 10.13039/501100007129;
                Award ID: 2017C03
                Funded by: Youth Interdisciplinary Science and Innovative Research Groups of Shandong University
                Award ID: 2020QNQT014
                Funded by: National Natural Science Foundation of China , doi 10.13039/501100001809;
                Award ID: 31970201
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                March 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.1 mode:remove_FC converted:28.02.2022

                Biotechnology
                maize,cell division,cell elongation,auxin signalling,nuclear‐cytoplasmic trafficking,plant height,phosphorylation,zmte1

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