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      More microbial manipulation and plant defense than soil fertility for biochar in food production: A field experiment of replanted ginseng with different biochars

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          Abstract

          The role of biochar–microbe interaction in plant rhizosphere mediating soil-borne disease suppression has been poorly understood for plant health in field conditions. Chinese ginseng ( Panax ginseng C. A. Meyer) is widely cultivated in Alfisols across Northeast China, being often stressed severely by pathogenic diseases. In this study, the topsoil of a continuously cropped ginseng farm was amended at 20 t ha –1, respectively, with manure biochar (PB), wood biochar (WB), and maize residue biochar (MB) in comparison to conventional manure compost (MC). Post-amendment changes in edaphic properties of bulk topsoil and the rhizosphere, in root growth and quality, and disease incidence were examined with field observations and physicochemical, molecular, and biochemical assays. In the 3 years following the amendment, the increases over MC in root biomass were parallel to the overall fertility improvement, being greater with MB and WB than with PB. Differently, the survival rate of ginseng plants increased insignificantly with PB but significantly with WB (14%) and MB (21%), while ginseng root quality was unchanged with WB but improved with PB (32%) and MB (56%). For the rhizosphere at harvest following 3 years of growing, the total content of phenolic acids from root exudate decreased by 56, 35, and 45% with PB, WB, and MB, respectively, over MC. For the rhizosphere microbiome, total fungal and bacterial abundance both was unchanged under WB but significantly increased under MB (by 200 and 38%), respectively, over MC. At the phyla level, abundances of arbuscular mycorrhizal and Bryobacter as potentially beneficial microbes were elevated while those of Fusarium and Ilyonectria as potentially pathogenic microbes were reduced, with WB and MB over MC. Moreover, rhizosphere fungal network complexity was enhanced insignificantly under PB but significantly under WB moderately and MB greatly, over MC. Overall, maize biochar exerted a great impact rather on rhizosphere microbial community composition and networking of functional groups, particularly fungi, and thus plant defense than on soil fertility and root growth.

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            UPARSE: highly accurate OTU sequences from microbial amplicon reads.

            Amplified marker-gene sequences can be used to understand microbial community structure, but they suffer from a high level of sequencing and amplification artifacts. The UPARSE pipeline reports operational taxonomic unit (OTU) sequences with ≤1% incorrect bases in artificial microbial community tests, compared with >3% incorrect bases commonly reported by other methods. The improved accuracy results in far fewer OTUs, consistently closer to the expected number of species in a community.
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              An extraction method for measuring soil microbial biomass C

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                13 December 2022
                2022
                : 13
                : 1065313
                Affiliations
                [1] 1Institute of Resource, Ecosystem and Environment of Agriculture, and Department of Soil Science, Nanjing Agricultural University, Nanjing , Jiangsu, China
                [2] 2Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University , Nanjing, China
                [3] 3College of Chinese Medicinal Materials, Jilin Agricultural University , Changchun, China
                [4] 4Key Laboratory of Recycling and Eco-treatment of Waste Biomass of Zhejiang Province, Zhejiang University of Science and Technology , Hangzhou, China
                [5] 5School of Materials Science and Engineering, University of New South Wales , Sydney, NSW, Australia
                Author notes

                Edited by: Xi-En Long, Nantong University, China

                Reviewed by: Wenting Feng, Institute of Agricultural Resources and Regional Planning (CAAS), China; Izhar Ali, Guangxi University, China; Hongmiao Wu, Anhui Agricultural University, China

                This article was submitted to Terrestrial Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.1065313
                9792985
                b4e69d83-af54-4eec-946b-e3acf7facebd
                Copyright © 2022 Liu, Xia, Tang, Liu, Bian, Yang, Zheng, Cheng, Zhang, Drosos, Li, Shan, Joseph and Pan.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 09 October 2022
                : 14 November 2022
                Page count
                Figures: 8, Tables: 4, Equations: 0, References: 89, Pages: 19, Words: 12338
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                soil amendment,manure compost,medicine plant,allelochemicals,beneficial microbes,microbial networking,organic molecules,plant defense

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