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      The Polymorphic Nuclear Factor NFIB Regulates Hepatic CYP2D6 Expression and Influences Risperidone Metabolism in Psychiatric Patients

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          Abstract

          The genetic background for interindividual variability of the polymorphic CYP2D6 enzyme activity remains incompletely understood and the role of NFIB genetic polymorphism for this variability was evaluated in this translational study. We investigated the effect of NFIB expression in vitro using 3D liver spheroids, Huh7 cells, and the influence of the NFIB polymorphism on metabolism of risperidone in patients in vivo. We found that NFIB regulates several important pharmacogenes, including CYP2D6. NFIB inhibited CYP2D6 gene expression in Huh7 cells and NFIB expression in livers was predominantly nuclear and reduced at the mRNA and protein level in carriers of the NFIB rs28379954 T>C allele. Based on 604 risperidone treated patients genotyped for CYP2D6 and NFIB, we found that the rate of risperidone hydroxylation was elevated in NFIB rs28379954 T>C carriers among CYP2D6 normal metabolizers, resulting in a similar rate of drug metabolism to what is observed in CYP2D6 ultrarapid metabolizers, with no such effect observed in CYP2D6 poor metabolizers lacking functional enzyme. The results indicate that NFIB constitutes a novel nuclear factor in the regulation of cytochrome P450 genes, and that its polymorphism is a predictor for the rate of CYP2D6 dependent drug metabolism in vivo.

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          Most cited references19

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          Worldwide Distribution of Cytochrome P450 Alleles: A Meta‐analysis of Population‐scale Sequencing Projects

          Genetic polymorphisms in cytochrome P450 (CYP) genes can result in altered metabolic activity toward a plethora of clinically important medications. Thus, single nucleotide variants and copy number variations in CYP genes are major determinants of drug pharmacokinetics and toxicity and constitute pharmacogenetic biomarkers for drug dosing, efficacy, and safety. Strikingly, the distribution of CYP alleles differs considerably between populations with important implications for personalized drug therapy and healthcare programs. To provide a global distribution map of CYP alleles with clinical importance, we integrated whole‐genome and exome sequencing data from 56,945 unrelated individuals of five major human populations. By combining this dataset with population‐specific linkage information, we derive the frequencies of 176 CYP haplotypes, providing an extensive resource for major genetic determinants of drug metabolism. Furthermore, we aggregated this dataset into spectra of predicted functional variability in the respective populations and discuss the implications for population‐adjusted pharmacological treatment strategies.
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            Characterization of primary human hepatocyte spheroids as a model system for drug-induced liver injury, liver function and disease

            Liver biology and function, drug-induced liver injury (DILI) and liver diseases are difficult to study using current in vitro models such as primary human hepatocyte (PHH) monolayer cultures, as their rapid de-differentiation restricts their usefulness substantially. Thus, we have developed and extensively characterized an easily scalable 3D PHH spheroid system in chemically-defined, serum-free conditions. Using whole proteome analyses, we found that PHH spheroids cultured this way were similar to the liver in vivo and even retained their inter-individual variability. Furthermore, PHH spheroids remained phenotypically stable and retained morphology, viability, and hepatocyte-specific functions for culture periods of at least 5 weeks. We show that under chronic exposure, the sensitivity of the hepatocytes drastically increased and toxicity of a set of hepatotoxins was detected at clinically relevant concentrations. An interesting example was the chronic toxicity of fialuridine for which hepatotoxicity was mimicked after repeated-dosing in the PHH spheroid model, not possible to detect using previous in vitro systems. Additionally, we provide proof-of-principle that PHH spheroids can reflect liver pathologies such as cholestasis, steatosis and viral hepatitis. Combined, our results demonstrate that the PHH spheroid system presented here constitutes a versatile and promising in vitro system to study liver function, liver diseases, drug targets and long-term DILI.
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              Roles of the NFI/CTF gene family in transcription and development.

              The Nuclear Factor I (NFI) family of site-specific DNA-binding proteins (also known as CTF or CAAT box transcription factor) functions both in viral DNA replication and in the regulation of gene expression. The classes of genes whose expression is modulated by NFI include those that are ubiquitously expressed, as well as those that are hormonally, nutritionally, and developmentally regulated. The NFI family is composed of four members in vertebrates (NFI-A, NFI-B, NFI-C and NFI-X), and the four NFI genes are expressed in unique, but overlapping, patterns during mouse embryogenesis and in the adult. Transcripts of each NFI gene are differentially spliced, yielding as many as nine distinct proteins from a single gene. Products of the four NFI genes differ in their abilities to either activate or repress transcription, likely through fundamentally different mechanisms. Here, we will review the properties of the NFI genes and proteins and their known functions in gene expression and development.
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                Author and article information

                Contributors
                magnus.ingelman-sundberg@ki.se
                Journal
                Clin Pharmacol Ther
                Clin Pharmacol Ther
                10.1002/(ISSN)1532-6535
                CPT
                Clinical Pharmacology and Therapeutics
                John Wiley and Sons Inc. (Hoboken )
                0009-9236
                1532-6535
                20 March 2022
                May 2022
                20 March 2022
                : 111
                : 5 ( doiID: 10.1002/cpt.v111.5 )
                : 1165-1174
                Affiliations
                [ 1 ] Center for Psychopharmacology Diakonhjemmet Hospital Vinderen Oslo Norway
                [ 2 ] Section for Pharmacology and Pharmaceutical Biosciences Department of Pharmacy University of Oslo Oslo Norway
                [ 3 ] Department of Physiology and Pharmacology Section of Pharmacogenetics Karolinska Institutet Stockholm Sweden
                [ 4 ] NORMENT Institute of Clinical Medicine Faculty of Medicine University of Oslo Oslo Norway
                [ 5 ] Department of Physiology Faculty of Pharmacy University of Belgrade Belgrade Serbia
                Author notes
                [*] [* ] Correspondence: Magnus Ingelman‐Sundberg ( magnus.ingelman-sundberg@ 123456ki.se )

                [ † ]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-4724-7396
                https://orcid.org/0000-0003-3709-5827
                https://orcid.org/0000-0001-6646-4551
                https://orcid.org/0000-0001-6789-7076
                https://orcid.org/0000-0002-5296-4245
                https://orcid.org/0000-0001-6190-2751
                https://orcid.org/0000-0002-7255-9079
                Article
                CPT2571
                10.1002/cpt.2571
                9314634
                35253216
                b4e1f165-6246-40ee-89ec-07de6296cb6a
                © 2022 The Authors. Clinical Pharmacology & Therapeutics published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 16 December 2021
                : 21 February 2022
                Page count
                Figures: 4, Tables: 2, Pages: 10, Words: 6173
                Funding
                Funded by: South‐Eastern Norway Regional Health Authority
                Award ID: 2020019
                Funded by: Swedish Cancer Society , doi 10.13039/501100002794;
                Award ID: 0599
                Funded by: European Research Council (ERC) , doi 10.13039/100010663;
                Award ID: 742020
                Funded by: Swedish Research Council , doi 10.13039/501100004359;
                Award ID: 2021‐02732
                Funded by: European Union’s Horizon 2020
                Award ID: 668353/U‐PGx
                Categories
                Article
                Research
                Articles
                Custom metadata
                2.0
                May 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.7 mode:remove_FC converted:26.07.2022

                Pharmacology & Pharmaceutical medicine
                Pharmacology & Pharmaceutical medicine

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