9
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Personalising intravenous to oral antibiotic switch decision making through fair interpretable machine learning

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Antimicrobial resistance (AMR) and healthcare associated infections pose a significant threat globally. One key prevention strategy is to follow antimicrobial stewardship practices, in particular, to maximise targeted oral therapy and reduce the use of indwelling vascular devices for intravenous (IV) administration. Appreciating when an individual patient can switch from IV to oral antibiotic treatment is often non-trivial and not standardised. To tackle this problem we created a machine learning model to predict when a patient could switch based on routinely collected clinical parameters. 10,362 unique intensive care unit stays were extracted and two informative feature sets identified. Our best model achieved a mean AUROC of 0.80 (SD 0.01) on the hold-out set while not being biased to individuals protected characteristics. Interpretability methodologies were employed to create clinically useful visual explanations. In summary, our model provides individualised, fair, and interpretable predictions for when a patient could switch from IV-to-oral antibiotic treatment. Prospectively evaluation of safety and efficacy is needed before such technology can be applied clinically.

          Abstract

          The decision to switch patients from intravenous to oral antibiotic therapy is important for the individual and wider society. Here, authors show a machine learning model using routine clinical data can predict when a patient could switch.

          Related collections

          Most cited references33

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          SciPy 1.0: fundamental algorithms for scientific computing in Python

          SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year. In this work, we provide an overview of the capabilities and development practices of SciPy 1.0 and highlight some recent technical developments.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            SMOTE: Synthetic Minority Over-sampling Technique

            An approach to the construction of classifiers from imbalanced datasets is described. A dataset is imbalanced if the classification categories are not approximately equally represented. Often real-world data sets are predominately composed of ``normal'' examples with only a small percentage of ``abnormal'' or ``interesting'' examples. It is also the case that the cost of misclassifying an abnormal (interesting) example as a normal example is often much higher than the cost of the reverse error. Under-sampling of the majority (normal) class has been proposed as a good means of increasing the sensitivity of a classifier to the minority class. This paper shows that a combination of our method of over-sampling the minority (abnormal) class and under-sampling the majority (normal) class can achieve better classifier performance (in ROC space) than only under-sampling the majority class. This paper also shows that a combination of our method of over-sampling the minority class and under-sampling the majority class can achieve better classifier performance (in ROC space) than varying the loss ratios in Ripper or class priors in Naive Bayes. Our method of over-sampling the minority class involves creating synthetic minority class examples. Experiments are performed using C4.5, Ripper and a Naive Bayes classifier. The method is evaluated using the area under the Receiver Operating Characteristic curve (AUC) and the ROC convex hull strategy.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Index for rating diagnostic tests

                Bookmark

                Author and article information

                Contributors
                william.bolton@imperial.ac.uk
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                13 January 2024
                13 January 2024
                2024
                : 15
                : 506
                Affiliations
                [1 ]Centre for Antimicrobial Optimisation, Imperial College London, ( https://ror.org/041kmwe10) London, UK
                [2 ]AI4Health Centre for Doctoral Training, Imperial College London, ( https://ror.org/041kmwe10) London, UK
                [3 ]Department of Computing, Imperial College London, ( https://ror.org/041kmwe10) London, UK
                [4 ]GRID grid.7445.2, ISNI 0000 0001 2113 8111, National Institute for Health Research, Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, , Imperial College London, ; London, UK
                [5 ]Faculty of Health & Life Sciences, University of Liverpool, ( https://ror.org/04xs57h96) Liverpool, UK
                [6 ]Imperial College Healthcare NHS Trust, ( https://ror.org/056ffv270) London, UK
                [7 ]Centre for Bio-inspired Technology, Department of Electrical and Electronic Engineering, Imperial College London, ( https://ror.org/041kmwe10) London, UK
                [8 ]Department of Infectious Diseases, Imperial College London, ( https://ror.org/041kmwe10) London, UK
                Author information
                http://orcid.org/0000-0003-3969-4874
                http://orcid.org/0000-0002-2630-9722
                Article
                44740
                10.1038/s41467-024-44740-2
                10787786
                38218885
                b3b38c36-d31a-4c7b-88d5-f58caa4ba6a8
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 May 2023
                : 2 January 2024
                Categories
                Article
                Custom metadata
                © Springer Nature Limited 2024

                Uncategorized
                predictive markers,computer science,signs and symptoms,bacterial infection
                Uncategorized
                predictive markers, computer science, signs and symptoms, bacterial infection

                Comments

                Comment on this article