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      NDUFS4 regulates cristae remodeling in diabetic kidney disease

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          Abstract

          The mitochondrial electron transport chain (ETC) is a highly adaptive process to meet metabolic demands of the cell, and its dysregulation has been associated with diverse clinical pathologies. However, the role and nature of impaired ETC in kidney diseases remains poorly understood. Here, we generate diabetic mice with podocyte-specific overexpression of Ndufs4, an accessory subunit of mitochondrial complex I, as a model investigate the role of ETC integrity in diabetic kidney disease (DKD). We find that conditional male mice with genetic overexpression of Ndufs4 exhibit significant improvements in cristae morphology, mitochondrial dynamics, and albuminuria. By coupling proximity labeling with super-resolution imaging, we also identify the role of cristae shaping protein STOML2 in linking NDUFS4 with improved cristae morphology. Together, we provide the evidence on the central role of NDUFS4 as a regulator of cristae remodeling and mitochondrial function in kidney podocytes. We propose that targeting NDUFS4 represents a promising approach to slow the progression of DKD.

          Abstract

          Mitochondrial Ndufs4, a subunit of complex I, is a regulator of the electron transport chain. Here, the authors show that forced expression of Ndufs4 in podocytes improves the assembly of respiratory supercomplexes, maintains cristae integrity, and mitigates the progression of diabetic kidney disease

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          Most cited references77

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          MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

          MotionCor2 software corrects for beam-induced sample motion, improving the resolution of cryo-EM reconstructions.
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            UCSF ChimeraX: Meeting modern challenges in visualization and analysis

            UCSF ChimeraX is next‐generation software for the visualization and analysis of molecular structures, density maps, 3D microscopy, and associated data. It addresses challenges in the size, scope, and disparate types of data attendant with cutting‐edge experimental methods, while providing advanced options for high‐quality rendering (interactive ambient occlusion, reliable molecular surface calculations, etc.) and professional approaches to software design and distribution. This article highlights some specific advances in the areas of visualization and usability, performance, and extensibility. ChimeraX is free for noncommercial use and is available from http://www.rbvi.ucsf.edu/chimerax / for Windows, Mac, and Linux.
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              Automated electron microscope tomography using robust prediction of specimen movements.

              A new method was developed to acquire images automatically at a series of specimen tilts, as required for tomographic reconstruction. The method uses changes in specimen position at previous tilt angles to predict the position at the current tilt angle. Actual measurement of the position or focus is skipped if the statistical error of the prediction is low enough. This method allows a tilt series to be acquired rapidly when conditions are good but falls back toward the traditional approach of taking focusing and tracking images when necessary. The method has been implemented in a program, SerialEM, that provides an efficient environment for data acquisition. This program includes control of an energy filter as well as a low-dose imaging mode, in which tracking and focusing occur away from the area of interest. The program can automatically acquire a montage of overlapping frames, allowing tomography of areas larger than the field of the CCD camera. It also includes tools for navigating between specimen positions and finding regions of interest.
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                Author and article information

                Contributors
                fdanesh@mdanderson.org
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                4 March 2024
                4 March 2024
                2024
                : 15
                : 1965
                Affiliations
                [1 ]Section of Nephrology, The University of Texas MD Anderson Cancer Center, ( https://ror.org/04twxam07) Houston, TX USA
                [2 ]Department of Nephrology, Rheumatology, Endocrinology & Metabolism, Okayama University Graduate School of Medicine, Dentistry & Pharmaceutical Sciences, ( https://ror.org/02pc6pc55) Okayama, Japan
                [3 ]Department of Hematopathology, The University of Texas MD Anderson Cancer Center, ( https://ror.org/04twxam07) Houston, TX USA
                [4 ]Division of Nephrology, The Third Affiliated Hospital of Sun Yat-Sen University, ( https://ror.org/04tm3k558) Guangzhou, China
                [5 ]Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston, ( https://ror.org/03gds6c39) Houston, TX USA
                [6 ]Department of Integrative Biology and Pharmacology, The University of Texas Health Science Center at Houston, ( https://ror.org/03gds6c39) Houston, TX USA
                [7 ]Department of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, ( https://ror.org/04twxam07) Houston, TX USA
                [8 ]Department of Urology, Okayama University Graduate School of Medicine, Dentistry & Pharmaceutical Sciences, ( https://ror.org/02pc6pc55) Okayama, Japan
                [9 ]GRID grid.16753.36, ISNI 0000 0001 2299 3507, Department of Pediatrics, , Feinberg School of Medicine, Northwestern University, ; Chicago, IL USA
                [10 ]Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, ( https://ror.org/02pttbw34) Houston, TX USA
                Author information
                http://orcid.org/0000-0003-0296-7429
                http://orcid.org/0000-0001-7541-6252
                http://orcid.org/0000-0001-6266-3422
                http://orcid.org/0000-0002-8503-6023
                http://orcid.org/0000-0003-1468-5170
                http://orcid.org/0000-0001-6849-5239
                Article
                46366
                10.1038/s41467-024-46366-w
                10912198
                38438382
                b365e9df-d15a-4afc-95c5-6668b022049b
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 19 June 2023
                : 22 February 2024
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000062, U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases);
                Award ID: R01DK078900
                Award ID: R01DK091310
                Award Recipient :
                Funded by: U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases)
                Categories
                Article
                Custom metadata
                © Springer Nature Limited 2024

                Uncategorized
                diabetic nephropathy,mitochondria,diabetes complications
                Uncategorized
                diabetic nephropathy, mitochondria, diabetes complications

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