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      Genetic structure and forensic characterization of 36 Y‐chromosomal STR loci in Tibeto‐Burman‐speaking Yi population

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          Abstract

          Background

          Male‐specifically inherited Y‐STRs have been widely used in population genetics and forensic investigations.

          Methods

          We genotyped and analyzed Y chromosome haplotypes of 408 unrelated Tibeto‐Burman‐speaking Yi male individuals from Guizhou using Goldeneye ® Y‐PLUS kit. Population comparisons between the Guizhou Yi and 67 reference groups were performed via the AMOVA, MDS, and phylogenetic relationship reconstruction.

          Results

          A total of 389 alleles and 396 haplotypes could be detected, and the allelic frequencies ranged from 0.0025 to 0.9875. The haplotype diversity, random match probability, and discrimination capacity values were 0.9999, 0.0026, and 0.9900, respectively. The gene diversity (GD) of 36 Y‐STR loci in the studied group ranged from 0.0248 (DYS645) to 0.9601 (DYS385a/b). Our newly genotyped Yi samples show a close affinity with other Tibeto‐Burman speaking groups in China and Southeast Asia.

          Conclusions

          The population stratification was almost consistent with the geographic distribution and language‐family, both among Chinese and worldwide ethnic groups. Our data may provide useful information for paternal lineage in the forensic application and population genetics, as well as evidence for archaeological and historical research.

          Abstract

          We genotyped and analyzed Y chromosome haplotypes of 408 unrelated Tibeto‐Burman‐speaking Yi male individuals from Guizhou using Goldeneye ® Y‐PLUS kit. Our newly genotyped Yi samples show a close affinity with other Tibeto‐Burman speaking groups in China and Southeast Asia.

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          Most cited references49

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          MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

          We announce the release of an advanced version of the Molecular Evolutionary Genetics Analysis (MEGA) software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis. In version 6.0, MEGA now enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny. A new Timetree Wizard in MEGA6 facilitates this timetree inference by providing a graphical user interface (GUI) to specify the phylogeny and calibration constraints step-by-step. This version also contains enhanced algorithms to search for the optimal trees under evolutionary criteria and implements a more advanced memory management that can double the size of sequence data sets to which MEGA can be applied. Both GUI and command-line versions of MEGA6 can be downloaded from www.megasoftware.net free of charge.
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            The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.

            The male-specific region of the Y chromosome, the MSY, differentiates the sexes and comprises 95% of the chromosome's length. Here, we report that the MSY is a mosaic of heterochromatic sequences and three classes of euchromatic sequences: X-transposed, X-degenerate and ampliconic. These classes contain all 156 known transcription units, which include 78 protein-coding genes that collectively encode 27 distinct proteins. The X-transposed sequences exhibit 99% identity to the X chromosome. The X-degenerate sequences are remnants of ancient autosomes from which the modern X and Y chromosomes evolved. The ampliconic class includes large regions (about 30% of the MSY euchromatin) where sequence pairs show greater than 99.9% identity, which is maintained by frequent gene conversion (non-reciprocal transfer). The most prominent features here are eight massive palindromes, at least six of which contain testis genes.
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              Encoded evidence: DNA in forensic analysis.

              Sherlock Holmes said "it has long been an axiom of mine that the little things are infinitely the most important", but never imagined that such a little thing, the DNA molecule, could become perhaps the most powerful single tool in the multifaceted fight against crime. Twenty years after the development of DNA fingerprinting, forensic DNA analysis is key to the conviction or exoneration of suspects and the identification of victims of crimes, accidents and disasters, driving the development of innovative methods in molecular genetics, statistics and the use of massive intelligence databases.
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                Author and article information

                Contributors
                304714080@qq.com , mmm_hj@126.com
                304714080@qq.com , mmm_hj@126.com
                Journal
                Mol Genet Genomic Med
                Mol Genet Genomic Med
                10.1002/(ISSN)2324-9269
                MGG3
                Molecular Genetics & Genomic Medicine
                John Wiley and Sons Inc. (Hoboken )
                2324-9269
                15 January 2021
                February 2021
                : 9
                : 2 ( doiID: 10.1002/mgg3.v9.2 )
                : e1572
                Affiliations
                [ 1 ] Department of Forensic Medicine Guizhou Medical University Guiyang China
                [ 2 ] Guiyang Judicial Expertise Center of Public Security Guiyang China
                Author notes
                [*] [* ] Correspondence

                Yan Wu and Jiang Huang, Department of Forensic Medicine, Guizhou Medical University, Guiyang 550025, Guizhou, China.

                Email: 304714080@ 123456qq.com (Y. W.); mmm_hj@ 123456126.com (J. H.)

                Author information
                https://orcid.org/0000-0003-4220-5496
                https://orcid.org/0000-0002-0626-8417
                https://orcid.org/0000-0002-7949-6402
                https://orcid.org/0000-0002-2104-5529
                https://orcid.org/0000-0002-9373-4796
                https://orcid.org/0000-0003-0050-2687
                https://orcid.org/0000-0002-2249-596X
                https://orcid.org/0000-0003-0788-2539
                https://orcid.org/0000-0002-8065-6688
                https://orcid.org/0000-0001-5092-2087
                https://orcid.org/0000-0002-6821-3665
                Article
                MGG31572
                10.1002/mgg3.1572
                8077142
                33448700
                b1918145-5934-4cce-86a5-c14bfb6c570c
                © 2021 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 05 November 2020
                : 15 September 2020
                : 20 November 2020
                Page count
                Figures: 4, Tables: 0, Pages: 0, Words: 13158
                Funding
                Funded by: Guizhou Medical University Academic Sprout Cultivation Project
                Award ID: [2018]5779‐X
                Funded by: Guizhou "Hundred" innovative talents project
                Award ID: [2020] 6012
                Funded by: Guizhou Science Project
                Award ID: [2020]1Y353
                Funded by: Guizhou Province Engineering Technology Research Center Project
                Award ID: [2016]1345
                Funded by: Guizhou Scientific Support Project
                Award ID: [2019] 2825
                Award ID: [2020] 4Y057
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                February 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.2 mode:remove_FC converted:27.04.2021

                forensic,haplotypes,y chromosome,yi ethnicity,y‐strs
                forensic, haplotypes, y chromosome, yi ethnicity, y‐strs

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