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      Alveolar macrophages rely on GM-CSF from alveolar epithelial type 2 cells before and after birth

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          Abstract

          This study identifies AT2s as the relevant source of GM-CSF for the development and maintenance of alveolar macrophages. During organogenesis, nascent AT2s induce GM-CSF expression in a perfectly timed manner to support the proliferation and differentiation of fetal monocytes that contemporaneously seed the embryonic lungs.

          Abstract

          Programs defining tissue-resident macrophage identity depend on local environmental cues. For alveolar macrophages (AMs), these signals are provided by immune and nonimmune cells and include GM-CSF (CSF2). However, evidence to functionally link components of this intercellular cross talk remains scarce. We thus developed new transgenic mice to profile pulmonary GM-CSF expression, which we detected in both immune cells, including group 2 innate lymphoid cells and γδ T cells, as well as AT2s. AMs were unaffected by constitutive deletion of hematopoietic Csf2 and basophil depletion. Instead, AT2 lineage-specific constitutive and inducible Csf2 deletion revealed the nonredundant function of AT2-derived GM-CSF in instructing AM fate, establishing the postnatal AM compartment, and maintaining AMs in adult lungs. This AT2-AM relationship begins during embryogenesis, where nascent AT2s timely induce GM-CSF expression to support the proliferation and differentiation of fetal monocytes contemporaneously seeding the tissue, and persists into adulthood, when epithelial GM-CSF remains restricted to AT2s.

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          FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.

          The number of markers measured in both flow and mass cytometry keeps increasing steadily. Although this provides a wealth of information, it becomes infeasible to analyze these datasets manually. When using 2D scatter plots, the number of possible plots increases exponentially with the number of markers and therefore, relevant information that is present in the data might be missed. In this article, we introduce a new visualization technique, called FlowSOM, which analyzes Flow or mass cytometry data using a Self-Organizing Map. Using a two-level clustering and star charts, our algorithm helps to obtain a clear overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise. R code is available at https://github.com/SofieVG/FlowSOM and will be made available at Bioconductor.
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            Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.

            Mononuclear phagocytes, including monocytes, macrophages, and dendritic cells, contribute to tissue integrity as well as to innate and adaptive immune defense. Emerging evidence for labor division indicates that manipulation of these cells could bear therapeutic potential. However, specific ontogenies of individual populations and the overall functional organization of this cellular network are not well defined. Here we report a fate-mapping study of the murine monocyte and macrophage compartment taking advantage of constitutive and conditional CX(3)CR1 promoter-driven Cre recombinase expression. We have demonstrated that major tissue-resident macrophage populations, including liver Kupffer cells and lung alveolar, splenic, and peritoneal macrophages, are established prior to birth and maintain themselves subsequently during adulthood independent of replenishment by blood monocytes. Furthermore, we have established that short-lived Ly6C(+) monocytes constitute obligatory steady-state precursors of blood-resident Ly6C(-) cells and that the abundance of Ly6C(+) blood monocytes dynamically controls the circulation lifespan of their progeny. Copyright © 2013 Elsevier Inc. All rights reserved.
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              Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors.

              Most haematopoietic cells renew from adult haematopoietic stem cells (HSCs), however, macrophages in adult tissues can self-maintain independently of HSCs. Progenitors with macrophage potential in vitro have been described in the yolk sac before emergence of HSCs, and fetal macrophages can develop independently of Myb, a transcription factor required for HSC, and can persist in adult tissues. Nevertheless, the origin of adult macrophages and the qualitative and quantitative contributions of HSC and putative non-HSC-derived progenitors are still unclear. Here we show in mice that the vast majority of adult tissue-resident macrophages in liver (Kupffer cells), brain (microglia), epidermis (Langerhans cells) and lung (alveolar macrophages) originate from a Tie2(+) (also known as Tek) cellular pathway generating Csf1r(+) erythro-myeloid progenitors (EMPs) distinct from HSCs. EMPs develop in the yolk sac at embryonic day (E) 8.5, migrate and colonize the nascent fetal liver before E10.5, and give rise to fetal erythrocytes, macrophages, granulocytes and monocytes until at least E16.5. Subsequently, HSC-derived cells replace erythrocytes, granulocytes and monocytes. Kupffer cells, microglia and Langerhans cells are only marginally replaced in one-year-old mice, whereas alveolar macrophages may be progressively replaced in ageing mice. Our fate-mapping experiments identify, in the fetal liver, a sequence of yolk sac EMP-derived and HSC-derived haematopoiesis, and identify yolk sac EMPs as a common origin for tissue macrophages.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing - original draftRole: Writing - review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: ValidationRole: VisualizationRole: Writing - original draftRole: Writing - review & editing
                Role: Formal analysisRole: Investigation
                Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Validation
                Role: MethodologyRole: Resources
                Role: ConceptualizationRole: Funding acquisitionRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing - review & editing
                Role: Funding acquisitionRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing - review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: SupervisionRole: Writing - original draftRole: Writing - review & editing
                Journal
                J Exp Med
                J Exp Med
                jem
                The Journal of Experimental Medicine
                Rockefeller University Press
                0022-1007
                1540-9538
                04 October 2021
                25 August 2021
                : 218
                : 10
                : e20210745
                Affiliations
                [1 ] Institute of Physiology, University of Zurich, Zurich, Switzerland
                [2 ] Institute of Experimental Immunology, University of Zurich, Zurich, Switzerland
                [3 ] Department of Medicine, University of California San Francisco, San Francisco, CA
                [4 ] Department of Microbiology & Immunology, University of California San Francisco, San Francisco, CA
                [5 ] Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA
                Author notes
                Correspondence to Christoph Schneider: christoph.schneider@ 123456uzh.ch

                Disclosures: The authors declare no competing interests exist.

                [*]

                J. Gschwend and S. Sherman contributed equally to this paper.

                Author information
                https://orcid.org/0000-0001-7212-4393
                https://orcid.org/0000-0002-0462-2005
                https://orcid.org/0000-0002-3253-2322
                https://orcid.org/0000-0002-0343-1848
                https://orcid.org/0000-0003-0620-7224
                https://orcid.org/0000-0002-5468-6867
                https://orcid.org/0000-0002-1541-7867
                https://orcid.org/0000-0002-0452-2960
                Article
                jem.20210745
                10.1084/jem.20210745
                8404471
                34431978
                b13a6df8-fce6-4ce6-9d79-1a29641f823d
                © 2021 Gschwend et al.

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).

                History
                : 05 April 2021
                : 27 June 2021
                : 04 August 2021
                Page count
                Pages: 20
                Funding
                Funded by: University of California San Francisco, DOI http://dx.doi.org/10.13039/100008069;
                Funded by: Diabetes Research Center;
                Funded by: National Institutes of Health, DOI http://dx.doi.org/10.13039/100000002;
                Funded by: Howard Hughes Medical Institute, DOI http://dx.doi.org/10.13039/100000011;
                Funded by: Sandler Asthma Basic Research Center;
                Funded by: University of California San Francisco, DOI http://dx.doi.org/10.13039/100008069;
                Funded by: Swiss National Science Foundation, DOI http://dx.doi.org/10.13039/501100001711;
                Award ID: 310030_188450
                Funded by: Peter Hans Hofschneider Professorship for Molecular Medicine;
                Categories
                Article
                Mucosal Immunology
                Innate Immunity and Inflammation

                Medicine
                Medicine

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