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      KAP1/TRIM28: Transcriptional Activator and/or Repressor of Viral and Cellular Programs?

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          Abstract

          Several transcriptional and epigenetic regulators have been functionally linked to the control of viral and cellular gene expression programs. One such regulator is Krüppel-associated box (KRAB)-associated protein 1 (KAP1: also named TRIM28 or TIF1β), which has been extensively studied in the past three decades. Here we offer an up-to date review of its various functions in a diversity of contexts. We first summarize the discovery of KAP1 repression of endogenous retroviruses during development. We then deliberate evidence in the literature suggesting KAP1 is both an activator and repressor of HIV-1 transcription and discuss experimental differences and limitations of previous studies. Finally, we discuss KAP1 regulation of DNA and RNA viruses, and then expand on KAP1 control of cellular responses and immune functions. While KAP1 positive and negative regulation of viral and cellular transcriptional programs is vastly documented, our mechanistic understanding remains narrow. We thus propose that precision genetic tools to reveal direct KAP1 functions in gene regulation will be required to not only illuminate new biology but also provide the foundation to translate the basic discoveries from the bench to the clinics.

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          Most cited references106

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          The dTAG system for immediate and target-specific protein degradation

          Dissecting complex biological systems requires target-specific control of protein function or abundance. Genetic perturbations are limited by off-target effects, multi-component complexity, and irreversibility. Most limiting is the requisite delay from modulation to experimental measurement. To enable the immediate and selective control of single protein abundance, we created a chemical biology system that leverages the potency of cell-permeable heterobifunctional degraders. The dTAG system pairs a novel degrader of FKBP12 F36V with expression of FKBP12 F36V in-frame with a protein of interest. By transgene expression or CRISPR-mediated locus-specific knock-in, we exemplify a generalizable strategy to study the immediate consequence of protein loss. Using dTAG, we observe an unexpected superior anti-proliferative effect of pan-BET bromodomain degradation over selective BRD4 degradation, characterize immediate effects of KRAS G12V loss on proteomic signaling, and demonstrate rapid degradation in vivo . This technology platform will confer kinetic resolution to biological investigation and provide target validation in the context of drug discovery.
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            Transcriptional activation by recruitment.

            The recruitment model for gene activation stipulates that an activator works by bringing the transcriptional machinery to the DNA. Recent experiments in bacteria and yeast indicate that many genes can be activated by this mechanism. These findings have implications for our understanding of the nature of activating regions and their targets, and for the role of histones in gene regulation.
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              Concepts in sumoylation: a decade on.

              A decade has passed since SUMO (small ubiquitin-related modifier) was discovered to be a reversible post-translational protein modifier. During this time many enzymes that participate in regulated SUMO-conjugation and -deconjugation pathways have been identified and characterized. In parallel, the search for SUMO substrates has produced a long list of targets, which appear to be involved in most cellular functions. Sumoylation is a highly dynamic process and its outcomes are extremely diverse, ranging from changes in localization to altered activity and, in some cases, stability of the modified protein. At first glance, these effects have nothing in common; however, it seems that they all result from changes in the molecular interactions of the sumoylated proteins.
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                Author and article information

                Contributors
                Journal
                Front Cell Infect Microbiol
                Front Cell Infect Microbiol
                Front. Cell. Infect. Microbiol.
                Frontiers in Cellular and Infection Microbiology
                Frontiers Media S.A.
                2235-2988
                23 February 2022
                2022
                : 12
                : 834636
                Affiliations
                [1] Department of Microbiology, The University of Texas Southwestern Medical Center , Dallas, TX, United States
                Author notes

                Edited by: Anna Kula, Jagiellonian University, Poland

                Reviewed by: Alessia Zamborlini, Université Paris-Sud, France; Rameez Raja, Cleveland Clinic, United States

                *Correspondence: Iván D’Orso, Ivan.Dorso@ 123456utsouthwestern.edu

                †These authors have contributed equally to this work

                This article was submitted to Virus and Host, a section of the journal Frontiers in Cellular and Infection Microbiology

                Article
                10.3389/fcimb.2022.834636
                8904932
                35281453
                aed6e2a5-8733-4152-9ba0-a25e5be06361
                Copyright © 2022 Randolph, Hyder and D’Orso

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 December 2021
                : 03 February 2022
                Page count
                Figures: 5, Tables: 0, Equations: 0, References: 106, Pages: 15, Words: 9663
                Funding
                Funded by: National Institutes of Health , doi 10.13039/100000002;
                Award ID: R01AI114362
                Categories
                Cellular and Infection Microbiology
                Review

                Infectious disease & Microbiology
                kap1,trim28,hiv-1,transcriptional regulation,epigenetic silencing

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