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      Listeria monocytogenes requires cellular respiration for NAD + regeneration and pathogenesis

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          Abstract

          Cellular respiration is essential for multiple bacterial pathogens and a validated antibiotic target. In addition to driving oxidative phosphorylation, bacterial respiration has a variety of ancillary functions that obscure its contribution to pathogenesis. We find here that the intracellular pathogen Listeria monocytogenes encodes two respiratory pathways which are partially functionally redundant and indispensable for pathogenesis. Loss of respiration decreased NAD + regeneration, but this could be specifically reversed by heterologous expression of a water-forming NADH oxidase (NOX). NOX expression fully rescued intracellular growth defects and increased L. monocytogenes loads >1000-fold in a mouse infection model. Consistent with NAD + regeneration maintaining L. monocytogenes viability and enabling immune evasion, a respiration-deficient strain exhibited elevated bacteriolysis within the host cytosol and NOX expression rescued this phenotype. These studies show that NAD + regeneration represents a major role of L. monocytogenes respiration and highlight the nuanced relationship between bacterial metabolism, physiology, and pathogenesis.

          eLife digest

          Cellular respiration is one of the main ways organisms make energy. It works by linking the oxidation of an electron donor (like sugar) to the reduction of an electron acceptor (like oxygen). Electrons pass between the two molecules along what is known as an ‘electron transport chain’. This process generates a force that powers the production of adenosine triphosphate (ATP), a molecule that cells use to store energy.

          Respiration is a common way for cells to replenish their energy stores, but it is not the only way. A simpler process that does not require a separate electron acceptor or an electron transport chain is called fermentation. Many bacteria have the capacity to perform both respiration and fermentation and do so in a context-dependent manner.

          Research has shown that respiration can contribute to bacterial diseases, like tuberculosis and listeriosis (a disease caused by the foodborne pathogen Listeria monocytogenes). Indeed, some antibiotics even target bacterial respiration. Despite being often discussed in the context of generating ATP, respiration is also important for many other cellular processes, including maintaining the balance of reduced and oxidized nicotinamide adenine dinucleotide (NAD) cofactors. Because of these multiple functions, the exact role respiration plays in disease is unknown.

          To find out more, Rivera-Lugo, Deng et al. developed strains of the bacterial pathogen Listeria monocytogenes that lacked some of the genes used in respiration. The resulting bacteria were still able to produce energy, but they became much worse at infecting mammalian cells. The use of a genetic tool that restored the balance of reduced and oxidized NAD cofactors revived the ability of respiration-deficient L. monocytogenes to infect mammalian cells, indicating that this balance is what the bacterium requires to infect.

          Research into respiration tends to focus on its role in generating ATP. But these results show that for some bacteria, this might not be the most important part of the process. Understanding the other roles of respiration could change the way that researchers develop antibacterial drugs in the future. This in turn could help with the growing problem of antibiotic resistance.

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          Most cited references58

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          Gut inflammation provides a respiratory electron acceptor for Salmonella

          Salmonella enterica serotype Typhimurium (S. Typhimurium) causes acute gut inflammation by using its virulence factors to invade the intestinal epithelium and survive in mucosal macrophages. The inflammatory response enhances the transmission success of S. Typhimurium by promoting its outgrowth in the gut lumen through unknown mechanisms. Here we show that reactive oxygen species generated during inflammation reacted with endogenous, luminal sulphur compounds (thiosulfate) to form a new respiratory electron acceptor, tetrathionate. The genes conferring the ability to utilize tetrathionate as an electron acceptor produced a growth advantage for S. Typhimurium over the competing microbiota in the lumen of the inflamed gut. We conclude that S. Typhimurium virulence factors induce host-driven production of a new electron acceptor that allows the pathogen to use respiration to compete with fermenting gut microbes. Thus, the ability to trigger intestinal inflammation is crucial for the biology of this diarrhoeal pathogen.
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            Host-derived nitrate boosts growth of E. coli in the inflamed gut.

            Changes in the microbial community structure are observed in individuals with intestinal inflammatory disorders. These changes are often characterized by a depletion of obligate anaerobic bacteria, whereas the relative abundance of facultative anaerobic Enterobacteriaceae increases. The mechanisms by which the host response shapes the microbial community structure, however, remain unknown. We show that nitrate generated as a by-product of the inflammatory response conferred a growth advantage to the commensal bacterium Escherichia coli in the large intestine of mice. Mice deficient in inducible nitric oxide synthase did not support the growth of E. coli by nitrate respiration, suggesting that the nitrate generated during inflammation was host-derived. Thus, the inflammatory host response selectively enhances the growth of commensal Enterobacteriaceae by generating electron acceptors for anaerobic respiration.
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              An Essential Role of the Mitochondrial Electron Transport Chain in Cell Proliferation Is to Enable Aspartate Synthesis.

              The mitochondrial electron transport chain (ETC) enables many metabolic processes, but why its inhibition suppresses cell proliferation is unclear. It is also not well understood why pyruvate supplementation allows cells lacking ETC function to proliferate. We used a CRISPR-based genetic screen to identify genes whose loss sensitizes human cells to phenformin, a complex I inhibitor. The screen yielded GOT1, the cytosolic aspartate aminotransferase, loss of which kills cells upon ETC inhibition. GOT1 normally consumes aspartate to transfer electrons into mitochondria, but, upon ETC inhibition, it reverses to generate aspartate in the cytosol, which partially compensates for the loss of mitochondrial aspartate synthesis. Pyruvate stimulates aspartate synthesis in a GOT1-dependent fashion, which is required for pyruvate to rescue proliferation of cells with ETC dysfunction. Aspartate supplementation or overexpression of an aspartate transporter allows cells without ETC activity to proliferate. Thus, enabling aspartate synthesis is an essential role of the ETC in cell proliferation.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                05 April 2022
                2022
                : 11
                : e75424
                Affiliations
                [1 ] Department of Molecular and Cell Biology, University of California, Berkeley ( https://ror.org/01an7q238) Berkeley United States
                [2 ] Graduate Group in Microbiology, University of California, Berkeley ( https://ror.org/01an7q238) Berkeley United States
                [3 ] Department of Biosciences, Rice University ( https://ror.org/008zs3103) Houston United States
                [4 ] The Molecular Foundry, Lawrence Berkeley National Laboratory ( https://ror.org/02jbv0t02) Berkeley United States
                [5 ] Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center ( https://ror.org/05dq2gs74) Nashville United States
                [6 ] Vanderbilt Institute for Infection, Immunology, and Inflammation, Vanderbilt University Medical Center ( https://ror.org/05dq2gs74) Nashville United States
                [7 ] Department of Medical Microbiology and Immunology, University of Wisconsin-Madison ( https://ror.org/01y2jtd41) Madison United States
                [8 ] Department of Nutritional Sciences and Toxicology, University of California, Berkeley ( https://ror.org/01an7q238) Berkeley United States
                [9 ] Center for Computational Biology, University of California, Berkeley ( https://ror.org/01an7q238) Berkeley United States
                [10 ] Department of Plant and Microbial Biology, University of California, Berkeley ( https://ror.org/01an7q238) Berkeley United States
                [11 ] Department of Microbiology, University of Chicago ( https://ror.org/024mw5h28) Chicago United States
                [12 ] Duchossois Family Institute, University of Chicago ( https://ror.org/024mw5h28) Chicago United States
                Harvard Medical School United States
                National Institute of Child Health and Human Development ( https://ror.org/04byxyr05) United States
                Harvard Medical School United States
                Harvard Medical School United States
                University of California, Davis ( https://ror.org/05rrcem69) United States
                University of Colorado Anschutz School of Medicine ( https://ror.org/03wmf1y16) United States
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0002-2346-2297
                https://orcid.org/0000-0001-5677-0651
                https://orcid.org/0000-0001-9367-794X
                https://orcid.org/0000-0002-8074-1348
                Article
                75424
                10.7554/eLife.75424
                9094743
                35380108
                ad325762-a812-49f5-ad64-4f34f2aba96e

                This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 09 November 2021
                : 04 April 2022
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: T32GM007215
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01AI137070
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01AI073843
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: 1P01AI063302
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: 1R01AI27655
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: K22AI144031
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100009643, National Academies of Sciences, Engineering, and Medicine;
                Award ID: Ford Foundation Fellowship
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100005595, University of California;
                Award ID: Dissertation-Year Fellowship
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100005665, Kinship Foundation;
                Award ID: Searle Scholars Program
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000011, Howard Hughes Medical Institute;
                Award ID: Hanna H. Gray Fellows Program
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000861, Burroughs Wellcome Fund;
                Award ID: Postdoctoral Enrichment Program
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100006537, Vanderbilt University;
                Award ID: Academic Pathways Postdoctoral Fellowship
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000015, Department of Energy;
                Award ID: DE-AC02-05CH11231
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Biochemistry and Chemical Biology
                Microbiology and Infectious Disease
                Custom metadata
                The bacterial pathogen Listeria monocytogenes requires respiration for the maintenance of cellular redox homeostasis.

                Life sciences
                bacterial pathogenesis,cellular respiration,microbial metabolism,other
                Life sciences
                bacterial pathogenesis, cellular respiration, microbial metabolism, other

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