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      Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context

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          Abstract

          Prokaryotic life has dominated most of the evolutionary history of our planet, evolving to occupy virtually all available environmental niches. Extremophiles, especially those thriving under multiple extremes, represent a key area of research for multiple disciplines, spanning from the study of adaptations to harsh conditions, to the biogeochemical cycling of elements. Extremophile research also has implications for origin of life studies and the search for life on other planetary and celestial bodies. In this article, we will review the current state of knowledge for the biospace in which life operates on Earth and will discuss it in a planetary context, highlighting knowledge gaps and areas of opportunity.

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          Most cited references294

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          Life in extreme environments.

          Each recent report of liquid water existing elsewhere in the Solar System has reverberated through the international press and excited the imagination of humankind. Why? Because in the past few decades we have come to realize that where there is liquid water on Earth, virtually no matter what the physical conditions, there is life. What we previously thought of as insurmountable physical and chemical barriers to life, we now see as yet another niche harbouring 'extremophiles'. This realization, coupled with new data on the survival of microbes in the space environment and modelling of the potential for transfer of life between celestial bodies, suggests that life could be more common than previously thought. Here we examine critically what it means to be an extremophile, and the implications of this for evolution, biotechnology and especially the search for life in the Universe.
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            Global distribution of microbial abundance and biomass in subseafloor sediment.

            The global geographic distribution of subseafloor sedimentary microbes and the cause(s) of that distribution are largely unexplored. Here, we show that total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. This variation is strongly correlated with mean sedimentation rate and distance from land. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9⋅10(29) cells [corresponding to 4.1 petagram (Pg) C and ∼0.6% of Earth's total living biomass]. This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate Earth's total number of microbes and total living biomass to be, respectively, 50-78% and 10-45% lower than previous estimates.
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              Molecular aspects of bacterial pH sensing and homeostasis.

              Diverse mechanisms for pH sensing and cytoplasmic pH homeostasis enable most bacteria to tolerate or grow at external pH values that are outside the cytoplasmic pH range they must maintain for growth. The most extreme cases are exemplified by the extremophiles that inhabit environments with a pH of below 3 or above 11. Here, we describe how recent insights into the structure and function of key molecules and their regulators reveal novel strategies of bacterial pH homeostasis. These insights may help us to target certain pathogens more accurately and to harness the capacities of environmental bacteria more efficiently.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                15 April 2019
                2019
                : 10
                : 780
                Affiliations
                [1] 1Department of Earth Sciences, University of Southern California , Los Angeles, CA, United States
                [2] 2Earth-Life Science Institute, Tokyo Institute of Technology , Tokyo, Japan
                [3] 3Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Lab , Livermore, CA, United States
                [4] 4Department of Biology, University of Southern California , Los Angeles, CA, United States
                [5] 5Department of Astronomy – Astrobiology Program, University of Washington , Seattle, WA, United States
                [6] 6NASA Astrobiology Institute’s Virtual Planetary Laboratory, University of Washington , Seattle, WA, United States
                [7] 7Section of Infection and Immunity, Herman Ostrow School of Dentistry of USC, University of Southern California , Los Angeles, CA, United States
                [8] 8Department of Biology, University of Naples “Federico II” , Naples, Italy
                [9] 9Department of Marine and Coastal Science, Rutgers, The State University of New Jersey , New Brunswick, NJ, United States
                [10] 10Institute for Biological Resources and Marine Biotechnology, National Research Council of Italy , Ancona, Italy
                Author notes

                Edited by: Davide Zannoni, University of Bologna, Italy

                Reviewed by: James A. Coker, University of Maryland University College, United States; Paola Di Donato, University of Naples Parthenope, Italy

                *Correspondence: Donato Giovannelli, donato.giovannelli@ 123456unina.it

                This article was submitted to Extreme Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2019.00780
                6476344
                31037068
                ac76789f-800f-4f0a-ab7d-4e7887958920
                Copyright © 2019 Merino, Aronson, Bojanova, Feyhl-Buska, Wong, Zhang and Giovannelli.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 11 January 2019
                : 27 March 2019
                Page count
                Figures: 2, Tables: 5, Equations: 0, References: 316, Pages: 25, Words: 0
                Funding
                Funded by: National Aeronautics and Space Administration 10.13039/100000104
                Award ID: NNA13AA92A
                Funded by: Air Force Office of Scientific Research 10.13039/100000181
                Award ID: FA9550-14-1-0114
                Funded by: Division of Molecular and Cellular Biosciences 10.13039/100000152
                Award ID: MCB 15-17567
                Funded by: Center for Dark Energy Biosphere Investigations 10.13039/100013505
                Funded by: National Aeronautics and Space Administration 10.13039/100000104
                Funded by: NASA Astrobiology Institute 10.13039/100012627
                Categories
                Microbiology
                Review

                Microbiology & Virology
                polyextremophiles,limits of life,astrobiology,habitability and astrobiology,extremophiles/extremophily,search for life

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