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      A Mississippian (early Carboniferous) tetrapod showing early diversification of the hindlimbs

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      1 , 1 , , 2
      Communications Biology
      Nature Publishing Group UK
      Evolution, Ecology

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          Abstract

          The taxonomically diverse terrestrial tetrapod fauna from the late Mississippian East Kirkton Limestone includes the earliest known members of stem Amphibia and stem Amniota. Here we name and describe a new East Kirkton tetrapod with an unusual hindlimb morphology reminiscent of that of several stem- and primitive crown amniotes. It displays a unique ilium with two slender and elongate processes and a 5-digit pes with a long, stout metatarsal IV and a greatly elongate digit IV. The new taxon broadens our knowledge of East Kirkton tetrapods, adding to the remarkable diversity of their hindlimb constructions, functional specializations, locomotory modes, and adaptations to a wide variety of substrates. An unweighted character parsimony analysis places the new taxon in a polytomy alongside some other Carboniferous groups. Conversely, weighted parsimony and Bayesian analyses retrieve it among the earliest diverging stem amniotes, either as the basalmost anthracosaur or within a clade that includes also Eldeceeon and Silvanerpeton, crownward of an array of chroniosaurs plus anthracosaurs.

          Abstract

          Presenting Termonerpeton makrydactylus, an early tetrapod from late Mississippian Scotland. This new species demonstrates unusual hindlimb specialisations for its age.

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          Inference from Iterative Simulation Using Multiple Sequences

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            MrBayes 3: Bayesian phylogenetic inference under mixed models.

            MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
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              CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

              The recently-developed statistical method known as the "bootstrap" can be used to place confidence intervals on phylogenies. It involves resampling points from one's own data, with replacement, to create a series of bootstrap samples of the same size as the original data. Each of these is analyzed, and the variation among the resulting estimates taken to indicate the size of the error involved in making estimates from the original data. In the case of phylogenies, it is argued that the proper method of resampling is to keep all of the original species while sampling characters with replacement, under the assumption that the characters have been independently drawn by the systematist and have evolved independently. Majority-rule consensus trees can be used to construct a phylogeny showing all of the inferred monophyletic groups that occurred in a majority of the bootstrap samples. If a group shows up 95% of the time or more, the evidence for it is taken to be statistically significant. Existing computer programs can be used to analyze different bootstrap samples by using weights on the characters, the weight of a character being how many times it was drawn in bootstrap sampling. When all characters are perfectly compatible, as envisioned by Hennig, bootstrap sampling becomes unnecessary; the bootstrap method would show significant evidence for a group if it is defined by three or more characters.
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                Author and article information

                Contributors
                ts556@cam.ac.uk
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                14 April 2022
                14 April 2022
                2022
                : 5
                : 283
                Affiliations
                [1 ]GRID grid.5335.0, ISNI 0000000121885934, University Museum of Zoology Cambridge, ; Downing Street, Cambridge, CB2 3EJ UK
                [2 ]GRID grid.36511.30, ISNI 0000 0004 0420 4262, School of Life and Environmental Sciences, , University of Lincoln, Joseph Banks Laboratories, ; Green Lane, Lincoln, LN6 7DL UK
                Author information
                http://orcid.org/0000-0002-6546-1145
                http://orcid.org/0000-0002-6151-0704
                Article
                3199
                10.1038/s42003-022-03199-x
                9010477
                35422092
                aba7750d-df58-43b2-b9df-f7e07bba7abc
                © Crown 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 19 August 2021
                : 25 February 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000925, John Templeton Foundation (JTF);
                Award ID: 61408
                Award Recipient :
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                © The Author(s) 2022

                evolution,ecology
                evolution, ecology

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