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      Genomic and functional genomics analyses of gluten proteins and prospect for simultaneous improvement of end-use and health-related traits in wheat

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          Abstract

          Key message

          Recent genomic and functional genomics analyses have substantially improved the understanding on gluten proteins, which are important determinants of wheat grain quality traits. The new insights obtained and the availability of precise, versatile and high-throughput genome editing technologies will accelerate simultaneous improvement of wheat end-use and health-related traits.

          Abstract

          Being a major staple food crop in the world, wheat provides an indispensable source of dietary energy and nutrients to the human population. As worldwide population grows and living standards rise in both developed and developing countries, the demand for wheat with high quality attributes increases globally. However, efficient breeding of high-quality wheat depends on critically the knowledge on gluten proteins, which mainly include several families of prolamin proteins specifically accumulated in the endospermic tissues of grains. Although gluten proteins have been studied for many decades, efficient manipulation of these proteins for simultaneous enhancement of end-use and health-related traits has been difficult because of high complexities in their expression, function and genetic variation. However, recent genomic and functional genomics analyses have substantially improved the understanding on gluten proteins. Therefore, the main objective of this review is to summarize the genomic and functional genomics information obtained in the last 10 years on gluten protein chromosome loci and genes and the cis- and trans-factors regulating their expression in the grains, as well as the efforts in elucidating the involvement of gluten proteins in several wheat sensitivities affecting genetically susceptible human individuals. The new insights gathered, plus the availability of precise, versatile and high-throughput genome editing technologies, promise to speed up the concurrent improvement of wheat end-use and health-related traits and the development of high-quality cultivars for different consumption needs.

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          Most cited references156

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          CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

          Enhanced agricultural production through innovative breeding technology is urgently needed to increase access to nutritious foods worldwide. Recent advances in CRISPR/Cas genome editing enable efficient targeted modification in most crops, thus promising to accelerate crop improvement. Here, we review advances in CRISPR/Cas9 and its variants and examine their applications in plant genome editing and related manipulations. We highlight base-editing tools that enable targeted nucleotide substitutions and describe the various delivery systems, particularly DNA-free methods, that have linked genome editing with crop breeding. We summarize the applications of genome editing for trait improvement, development of techniques for fine-tuning gene regulation, strategies for breeding virus resistance, and the use of high-throughput mutant libraries. We outline future perspectives for genome editing in plant synthetic biology and domestication, advances in delivery systems, editing specificity, homology-directed repair, and gene drives. Finally, we discuss the challenges and opportunities for precision plant breeding and its bright future in agriculture.
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            Crops that feed the world 10. Past successes and future challenges to the role played by wheat in global food security

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              Low‐gluten, nontransgenic wheat engineered with CRISPR/Cas9

              Summary Coeliac disease is an autoimmune disorder triggered in genetically predisposed individuals by the ingestion of gluten proteins from wheat, barley and rye. The α‐gliadin gene family of wheat contains four highly stimulatory peptides, of which the 33‐mer is the main immunodominant peptide in patients with coeliac. We designed two sgRNAs to target a conserved region adjacent to the coding sequence for the 33‐mer in the α‐gliadin genes. Twenty‐one mutant lines were generated, all showing strong reduction in α‐gliadins. Up to 35 different genes were mutated in one of the lines of the 45 different genes identified in the wild type, while immunoreactivity was reduced by 85%. Transgene‐free lines were identified, and no off‐target mutations have been detected in any of the potential targets. The low‐gluten, transgene‐free wheat lines described here could be used to produce low‐gluten foodstuff and serve as source material to introgress this trait into elite wheat varieties.
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                Author and article information

                Contributors
                dwwang@henau.edu.cn
                zkp66@126.com
                Journal
                Theor Appl Genet
                Theor. Appl. Genet
                TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0040-5752
                1432-2242
                4 February 2020
                4 February 2020
                2020
                : 133
                : 5
                : 1521-1539
                Affiliations
                [1 ]GRID grid.108266.b, ISNI 0000 0004 1803 0494, College of Agronomy, State Key Laboratory of Wheat and Maize Crop Science, and Center for Crop Genome Engineering, , Henan Agricultural University, ; 15 Longzi Lake College Park, Zhengzhou, 450046 China
                [2 ]GRID grid.9227.e, ISNI 0000000119573309, State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, , Chinese Academy of Science, ; 1 West Beichen Road, Beijing, 100101 China
                [3 ]GRID grid.410727.7, ISNI 0000 0001 0526 1937, Institute of Crop Science, National Wheat Improvement Center, , Chinese Academy of Agricultural Sciences, ; 12 Zhongguancun South Street, Beijing, 100081 China
                Author notes

                Communicated by Albrecht E. Melchinger.

                Author information
                http://orcid.org/0000-0002-6230-8735
                Article
                3557
                10.1007/s00122-020-03557-5
                7214497
                32020238
                a91cc8e9-7a59-4e8e-ac71-13597cb0a967
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 25 October 2019
                : 24 January 2020
                Funding
                Funded by: Ministry of Science and Technology, China
                Award ID: grants 2016YFD0100500
                Award ID: 2017YFD0101000
                Award Recipient :
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                Review
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                © Springer-Verlag GmbH Germany, part of Springer Nature 2020

                Genetics
                Genetics

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