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      Adaptation to abiotic conditions drives local adaptation in bacteria and viruses coevolving in heterogeneous environments

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          Abstract

          Parasite local adaptation, the greater performance of parasites on their local compared with foreign hosts, has important consequences for the maintenance of diversity and epidemiology. While the abiotic environment may significantly affect local adaptation, most studies to date have failed either to incorporate the effects of the abiotic environment, or to separate them from those of the biotic environment. Here, we tease apart biotic and abiotic components of local adaptation using the bacterium Pseudomonas fluorescens and its viral parasite bacteriophage Φ2. We coevolved replicate populations of bacteria and phages at three different temperatures, and determined their performance against coevolutionary partners from the same and different temperatures. Crucially, we measured performance at different assay temperatures, which allowed us to disentangle adaptation to biotic and abiotic habitat components. Our results show that bacteria and phages are more resistant and infectious, respectively, at the temperature at which they previously coevolved, confirming that local adaptation to abiotic conditions can play a crucial role in determining parasite infectivity and host resistance. Our work underlines the need to assess host–parasite interactions across multiple relevant abiotic environments, and suggests that microbial adaption to local temperatures can create ecological barriers to dispersal across temperature gradients.

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          Bacteria-phage antagonistic coevolution in soil.

          Bacteria and their viruses (phages) undergo rapid coevolution in test tubes, but the relevance to natural environments is unclear. By using a "mark-recapture" approach, we showed rapid coevolution of bacteria and phages in a soil community. Unlike coevolution in vitro, which is characterized by increases in infectivity and resistance through time (arms race dynamics), coevolution in soil resulted in hosts more resistant to their contemporary than past and future parasites (fluctuating selection dynamics). Fluctuating selection dynamics, which can potentially continue indefinitely, can be explained by fitness costs constraining the evolution of high levels of resistance in soil. These results suggest that rapid coevolution between bacteria and phage is likely to play a key role in structuring natural microbial communities.
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            Temperature-mediated patterns of local adaptation in a natural plant-pathogen metapopulation.

            There have been numerous investigations of parasite local adaptation, a phenomenon important from the perspectives of both basic and applied evolutionary ecology. Recent work has demonstrated that temperature has striking effects on parasite performance by mediating trade-offs in parasite life history and through genotype x environment interactions. To test whether parasite local adaptation is mediated by temperature, I measured the performance of sympatric populations against allopatric populations of a fungal pathogen, Podosphaera plantaginis, on its host Plantago lanceolata, across a temperature gradient. I used data on parasite life history and epidemiology to derive fitness estimates to measure local adaptation. The results demonstrate unambiguously that trajectories of host-parasite co-evolution are tightly coupled with parasite adaptation to the abiotic habitat, as the strength, and even direction, of local adaptation varied with temperature. Patterns of local adaptation further depended on how parasite fitness was estimated, highlighting the importance of choosing relevant fitness measures in studies of local adaptation.
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              Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation

              Environmental heterogeneity influences coevolution and local adaptation in host–parasite systems. This also concerns applied issues, because the geographic range of parasites may depend on their capacity to adapt to abiotic conditions. We studied temperature-specific adaptation in the wheat yellow/stripe rust pathogen, Puccinia striiformis f.sp. tritici (PST). Using laboratory experiments, PST isolates from northern and southern France were studied for their ability to germinate and to infect bread and durum wheat cultivars over a temperature gradient. Pathogen origin × temperature interactions for infectivity and germination rate suggest local adaptation to high- versus low-temperature regimes in south and north. Competition experiments in southern and northern field sites showed a general competitive advantage of southern over northern isolates. This advantage was particularly pronounced in the southern ‘home’ site, consistent with a model integrating laboratory infectivity and field temperature variation. The stable PST population structure in France likely reflects adaptation to ecological and genetic factors: persistence of southern PST may be due to adaptation to the warmer Mediterranean climate; and persistence of northern PST can be explained by adaptation to commonly used cultivars, for which southern isolates are lacking the relevant virulence genes. Thus, understanding the role of temperature-specific adaptations may help to improve forecast models or breeding programmes.
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                Author and article information

                Journal
                Biol Lett
                Biol. Lett
                RSBL
                roybiolett
                Biology Letters
                The Royal Society
                1744-9561
                1744-957X
                February 2016
                February 2016
                : 12
                : 2
                : 20150879
                Affiliations
                [1 ]Laboratory of Genetics, Department of Plant Sciences, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands
                [2 ]Teagasc Food Research Centre , Moorepark, Fermoy, Co. Cork, Ireland
                [3 ]ESI & CEC, Biosciences, University of Exeter , Penryn Campus, Cornwall TR10 9EZ, UK
                Author notes
                Author information
                http://orcid.org/0000-0002-5992-8538
                Article
                rsbl20150879
                10.1098/rsbl.2015.0879
                4780547
                26888914
                a8082a60-5513-4049-be04-0c0c539e5078
                © 2016 The Authors.

                Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.

                History
                : 16 November 2015
                : 20 January 2016
                Funding
                Funded by: AXA Research Fund, http://dx.doi.org/10.13039/501100001961;
                Funded by: Royal Society, http://dx.doi.org/10.13039/501100000288;
                Funded by: Natural Environment Research Council, http://dx.doi.org/10.13039/501100000270;
                Funded by: Biotechnology and Biological Sciences Research Council, http://dx.doi.org/10.13039/501100000268;
                Categories
                1001
                70
                60
                69
                87
                Evolutionary Biology
                Custom metadata
                February, 2016

                Life sciences
                host–parasite interactions,local adaptation,coevolution,bacteria,bacteriophage,environmental heterogeneity

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