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      A mouse-adapted model of SARS-CoV-2 to test COVID-19 countermeasures

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          Abstract

          Coronaviruses are prone to emergence into new host species most recently evidenced by SARS-CoV-2, the causative agent of the COVID-19 pandemic 1 . Small animal models that recapitulate SARS-CoV-2 disease are desperately needed to rapidly evaluate medical countermeasures (MCMs) 2, 3 . SARS-CoV-2 cannot infect wildtype laboratory mice due to inefficient interactions between the viral spike (S) protein and the murine ortholog of the human receptor, ACE2 4 . We used reverse genetics 5 to remodel the interaction between S and mACE2 resulting in a recombinant virus (SARS-CoV-2 MA) that could utilize mACE2 for entry. SARS-CoV-2 MA replicated in both the upper and lower airways of both young adult and aged BALB/c mice. Importantly, disease was more severe in aged mice, and showed more clinically relevant phenotypes than those seen in HFH4-hACE2 transgenic mice. We then demonstrated the utility of this model through vaccine challenge studies in immune competent mice with native expression of mACE2. Lastly, we show that clinical candidate interferon (IFN) lambda-1a can potently inhibit SARS-CoV-2 replication in primary human airway epithelial cells in vitro, and both prophylactic and therapeutic administration diminished replication in mice. Our mouse-adapted SARS-CoV-2 model demonstrates age-related disease pathogenesis and supports the clinical use of pegylated IFN lambda-1a treatment in human COVID-19 infections 6 .

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          Most cited references48

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          Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus–Infected Pneumonia in Wuhan, China

          In December 2019, novel coronavirus (2019-nCoV)-infected pneumonia (NCIP) occurred in Wuhan, China. The number of cases has increased rapidly but information on the clinical characteristics of affected patients is limited.
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            Is Open Access

            A pneumonia outbreak associated with a new coronavirus of probable bat origin

            Since the outbreak of severe acute respiratory syndrome (SARS) 18 years ago, a large number of SARS-related coronaviruses (SARSr-CoVs) have been discovered in their natural reservoir host, bats 1–4 . Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans 5–7 . Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China. The epidemic, which started on 12 December 2019, had caused 2,794 laboratory-confirmed infections including 80 deaths by 26 January 2020. Full-length genome sequences were obtained from five patients at an early stage of the outbreak. The sequences are almost identical and share 79.6% sequence identity to SARS-CoV. Furthermore, we show that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus. Pairwise protein sequence analysis of seven conserved non-structural proteins domains show that this virus belongs to the species of SARSr-CoV. In addition, 2019-nCoV virus isolated from the bronchoalveolar lavage fluid of a critically ill patient could be neutralized by sera from several patients. Notably, we confirmed that 2019-nCoV uses the same cell entry receptor—angiotensin converting enzyme II (ACE2)—as SARS-CoV.
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              Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

              Abstract Background The initial cases of novel coronavirus (2019-nCoV)–infected pneumonia (NCIP) occurred in Wuhan, Hubei Province, China, in December 2019 and January 2020. We analyzed data on the first 425 confirmed cases in Wuhan to determine the epidemiologic characteristics of NCIP. Methods We collected information on demographic characteristics, exposure history, and illness timelines of laboratory-confirmed cases of NCIP that had been reported by January 22, 2020. We described characteristics of the cases and estimated the key epidemiologic time-delay distributions. In the early period of exponential growth, we estimated the epidemic doubling time and the basic reproductive number. Results Among the first 425 patients with confirmed NCIP, the median age was 59 years and 56% were male. The majority of cases (55%) with onset before January 1, 2020, were linked to the Huanan Seafood Wholesale Market, as compared with 8.6% of the subsequent cases. The mean incubation period was 5.2 days (95% confidence interval [CI], 4.1 to 7.0), with the 95th percentile of the distribution at 12.5 days. In its early stages, the epidemic doubled in size every 7.4 days. With a mean serial interval of 7.5 days (95% CI, 5.3 to 19), the basic reproductive number was estimated to be 2.2 (95% CI, 1.4 to 3.9). Conclusions On the basis of this information, there is evidence that human-to-human transmission has occurred among close contacts since the middle of December 2019. Considerable efforts to reduce transmission will be required to control outbreaks if similar dynamics apply elsewhere. Measures to prevent or reduce transmission should be implemented in populations at risk. (Funded by the Ministry of Science and Technology of China and others.)
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                27 September 2020
                27 August 2020
                October 2020
                09 April 2021
                : 586
                : 7830
                : 560-566
                Affiliations
                [1 ]Department of Microbiology & Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
                [2 ]Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
                [3 ]Department of Pathology & Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA
                [4 ]Eiger BioPharmaceuticals, Inc., Palo Alto, CA, USA
                [5 ]Departments of Medicine and Microbiology & Immunology, Stanford University, Stanford, CA, USA
                [6 ]Palo Alto Veterans Administration, Palo Alto, CA, USA
                [7 ]Rapidly Emerging Antiviral Drug Discovery Initiative, University of North Carolina, Chapel Hill, NC, USA
                Author notes

                Author contribution

                K.H.D III and S.R.L. designed and conducted in vitro and animal experiments, analyzed data, generated figures, and wrote manuscript. A.S. conducted animal experiments, C.E.E. generated VRP vaccine and vaccinated mice. D.R.M. conducted neutralization assay and analyzed data. S.A.M imaged and analyzed histology. A.W., K.E.G., and A.J.B. assisted with animal experiments. B.L.Y. and Y.J.H. performed cloning. L.E.J.A and E.H. assisted with transfection experiments. M.D.B., I.C.C., and J.S.G. provided resources and helped design and analyze experiments with peg-IFN-λ1. L.E.G conducted experiments, analyzed data, and edited manuscript. T.P.S. conducted experiments, analyzed data, and wrote manuscript. R.S.B supervised the project and wrote the manuscript.

                [*]

                Co-first Authors

                [§ ]Address correspondence to Ralph S. Baric, rbaric@ 123456email.unc.edu
                Article
                NIHMS1622376
                10.1038/s41586-020-2708-8
                8034761
                32854108
                a75095e1-0985-41e6-8655-798533c13005

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