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      Genetic and Epigenetic Control of CDKN1C Expression: Importance in Cell Commitment and Differentiation, Tissue Homeostasis and Human Diseases

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          Abstract

          The CDKN1C gene encodes the p57 Kip2 protein which has been identified as the third member of the CIP/Kip family, also including p27 Kip1 and p21 Cip1. In analogy with these proteins, p57 Kip2 is able to bind tightly and inhibit cyclin/cyclin-dependent kinase complexes and, in turn, modulate cell division cycle progression. For a long time, the main function of p57 Kip2 has been associated only to correct embryogenesis, since CDKN1C-ablated mice are not vital. Accordingly, it has been demonstrated that CDKN1C alterations cause three human hereditary syndromes, characterized by altered growth rate. Subsequently, the p57 Kip2 role in several cell phenotypes has been clearly assessed as well as its down-regulation in human cancers. CDKN1C lies in a genetic locus, 11p15.5, characterized by a remarkable regional imprinting that results in the transcription of only the maternal allele. The control of CDKN1C transcription is also linked to additional mechanisms, including DNA methylation and specific histone methylation/acetylation. Finally, long non-coding RNAs and miRNAs appear to play important roles in controlling p57 Kip2 levels. This review mostly represents an appraisal of the available data regarding the control of CDKN1C gene expression. In addition, the structure and function of p57 Kip2 protein are briefly described and correlated to human physiology and diseases.

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          Most cited references174

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          Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.

          Recent investigations have implicated long antisense noncoding RNAs in the epigenetic regulation of chromosomal domains. Here we show that Kcnq1ot1 is an RNA polymerase II-encoded, 91 kb-long, moderately stable nuclear transcript and that its stability is important for bidirectional silencing of genes in the Kcnq1 domain. Kcnq1ot1 interacts with chromatin and with the H3K9- and H3K27-specific histone methyltransferases G9a and the PRC2 complex in a lineage-specific manner. This interaction correlates with the presence of extended regions of chromatin enriched with H3K9me3 and H3K27me3 in the Kcnq1 domain in placenta, whereas fetal liver lacks both chromatin interactions and heterochromatin structures. In addition, the Kcnq1 domain is more often found in contact with the nucleolar compartment in placenta than in liver. Taken together, our data describe a mechanism whereby Kcnq1ot1 establishes lineage-specific transcriptional silencing patterns through recruitment of chromatin remodeling complexes and maintenance of these patterns through subsequent cell divisions occurs via targeting the associated regions to the perinucleolar compartment.
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            Mice lacking p21CIP1/WAF1 undergo normal development, but are defective in G1 checkpoint control.

            p21CIP1/WAF1 is a CDK inhibitor regulated by the tumor suppressor p53 and is hypothesized to mediate G1 arrest. p53 has been suggested to derive anti-oncogenic properties from this relationship. To test these notions, we created mice lacking p21CIP1/WAF1. They develop normally and (unlike p53-/- mice) have not developed spontaneous malignancies during 7 months of observation. Nonetheless, p21-/- embryonic fibroblasts are significantly deficient in their ability to arrest in G1 in response to DNA damage and nucleotide pool perturbation. p21-/- cells also exhibit a significant growth alteration in vitro, achieving a saturation density as high as that observed in p53-/- cells. In contrast, other aspects of p53 function, such as thymocytic apoptosis and the mitotic spindle checkpoint, appear normal. These results establish the role of p21CIP1/WAF1 in the G1 checkpoint, but suggest that the anti-apoptotic and the anti-oncogenic effects of p53 are more complex.
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              Hematopoietic stem cell quiescence maintained by p21cip1/waf1.

              Relative quiescence is a defining characteristic of hematopoietic stem cells, while their progeny have dramatic proliferative ability and inexorably move toward terminal differentiation. The quiescence of stem cells has been conjectured to be of critical biologic importance in protecting the stem cell compartment, which we directly assessed using mice engineered to be deficient in the G1 checkpoint regulator, cyclin-dependent kinase inhibitor, p21cip1/waf1 (p21). In the absence of p21, hematopoietic stem cell proliferation and absolute number were increased under normal homeostatic conditions. Exposing the animals to cell cycle-specific myelotoxic injury resulted in premature death due to hematopoietic cell depletion. Further, self-renewal of primitive cells was impaired in serially transplanted bone marrow from p21-/- mice, leading to hematopoietic failure. Therefore, p21 is the molecular switch governing the entry of stem cells into the cell cycle, and in its absence, increased cell cycling leads to stem cell exhaustion. Under conditions of stress, restricted cell cycling is crucial to prevent premature stem cell depletion and hematopoietic death.
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                Author and article information

                Journal
                Int J Mol Sci
                Int J Mol Sci
                ijms
                International Journal of Molecular Sciences
                MDPI
                1422-0067
                02 April 2018
                April 2018
                : 19
                : 4
                : 1055
                Affiliations
                [1 ]Department of Precision Medicine, University of Campania “Luigi Vanvitelli”, 80138 Naples, Italy; ema.stampone@ 123456gmail.com (E.S.); ilariacaldarelli@ 123456libero.it (I.C.); deborabencivenga@ 123456yahoo.it (D.B.)
                [2 ]Department of Sciences and Technologies, University of Sannio, 82100 Benevento, Italy; albzullo@ 123456unisannio.it (A.Z.); mancini@ 123456unisannio.it (F.P.M.)
                [3 ]CEINGE Biotecnologie Avanzate S. C. a R. L., 80145 Naples, Italy
                Author notes
                [* ]Correspondence: fulvio.dellaragione@ 123456unicampania.it (F.D.R.); adriana.borriello@ 123456unicampania.it (A.B.); Tel.: +39-081-566-5812 (F.D.R.); +39-081-566-7554 (A.B.)
                [†]

                These authors equally contributed to the manuscript.

                Author information
                https://orcid.org/0000-0002-9954-3608
                https://orcid.org/0000-0002-9026-8048
                Article
                ijms-19-01055
                10.3390/ijms19041055
                5979523
                29614816
                a62ac896-9e01-4520-96a5-0c9325bdf6c6
                © 2018 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 14 March 2018
                : 31 March 2018
                Categories
                Review

                Molecular biology
                p57kip2,cdkn1c,epigenetics,disease,cell differentiation
                Molecular biology
                p57kip2, cdkn1c, epigenetics, disease, cell differentiation

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