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      dynesty: a dynamic nested sampling package for estimating Bayesian posteriors and evidences

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      Monthly Notices of the Royal Astronomical Society
      Oxford University Press (OUP)

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          ABSTRACT

          We present dynesty, a public, open-source, python package to estimate Bayesian posteriors and evidences (marginal likelihoods) using the dynamic nested sampling methods developed by Higson et al. By adaptively allocating samples based on posterior structure, dynamic nested sampling has the benefits of Markov chain Monte Carlo (MCMC) algorithms that focus exclusively on posterior estimation while retaining nested sampling’s ability to estimate evidences and sample from complex, multimodal distributions. We provide an overview of nested sampling, its extension to dynamic nested sampling, the algorithmic challenges involved, and the various approaches taken to solve them in this and previous work. We then examine dynesty’s performance on a variety of toy problems along with several astronomical applications. We find in particular problems dynesty can provide substantial improvements in sampling efficiency compared to popular MCMC approaches in the astronomical literature. More detailed statistical results related to nested sampling are also included in the appendix.

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            Python for Scientific Computing

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                Author and article information

                Contributors
                (View ORCID Profile)
                Journal
                Monthly Notices of the Royal Astronomical Society
                Oxford University Press (OUP)
                0035-8711
                1365-2966
                April 2020
                April 11 2020
                April 2020
                April 11 2020
                February 03 2020
                : 493
                : 3
                : 3132-3158
                Affiliations
                [1 ]Harvard–Smithsonian Center for Astrophysics, 60 Garden St, Cambridge, MA 02138, USA
                Article
                10.1093/mnras/staa278
                a5464ba8-c489-479c-ae61-09ee689f97f2
                © 2020

                https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model

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