Combined Abiotic Stresses: Challenges and Potential for Crop Improvement

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Abstract

Abiotic stressors are major constraints that affect agricultural plant physio-morphological and biochemical attributes, resulting in a loss of normal functioning and, eventually, a severe decline in crop productivity. The co-occurrence of different abiotic stresses, rather than a specific stress situation, can alter or trigger a wide range of plant responses, such as altered metabolism, stunted growth, and restricted development. Therefore, systematic and rigorous studies are pivotal for understanding the impact of concurrent abiotic stress conditions on crop productivity. In doing so, this review emphasizes the implications and potential mechanisms for controlling/managing combined abiotic stresses, which can then be utilized to identify genotypes with combined stress tolerance. Furthermore, this review focuses on recent biotechnological approaches in deciphering combined stress tolerance in plants. As a result, agronomists, breeders, molecular biologists, and field pathologists will benefit from this literature in assessing the impact of interactions between combined abiotic stresses on crop performance and development of tolerant/resistant cultivars.

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Abiotic stress, the field environment and stress combination.

Ron Mittler (2006)

Farmers and breeders have long known that often it is the simultaneous occurrence of several abiotic stresses, rather than a particular stress condition, that is most lethal to crops. Surprisingly, the co-occurrence of different stresses is rarely addressed by molecular biologists that study plant acclimation. Recent studies have revealed that the response of plants to a combination of two different abiotic stresses is unique and cannot be directly extrapolated from the response of plants to each of the different stresses applied individually. Tolerance to a combination of different stress conditions, particularly those that mimic the field environment, should be the focus of future research programs aimed at developing transgenic crops and plants with enhanced tolerance to naturally occurring environmental conditions.

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Is Open Access

A survey of best practices for RNA-seq data analysis

Ana Conesa, Pedro Madrigal, Sonia Tarazona … (2016)

RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splicing, functional analysis, gene fusion detection and eQTL mapping. We highlight the challenges associated with each step. We discuss the analysis of small RNAs and the integration of RNA-seq with other functional genomics techniques. Finally, we discuss the outlook for novel technologies that are changing the state of the art in transcriptomics. Electronic supplementary material The online version of this article (doi:10.1186/s13059-016-0881-8) contains supplementary material, which is available to authorized users.

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When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress.

Ludmila Rizhsky, Hongjian Liang, Joel Shuman … (2004)

Within their natural habitat, plants are subjected to a combination of abiotic conditions that include stresses such as drought and heat. Drought and heat stress have been extensively studied; however, little is known about how their combination impacts plants. The response of Arabidopsis plants to a combination of drought and heat stress was found to be distinct from that of plants subjected to drought or heat stress. Transcriptome analysis of Arabidopsis plants subjected to a combination of drought and heat stress revealed a new pattern of defense response in plants that includes a partial combination of two multigene defense pathways (i.e. drought and heat stress), as well as 454 transcripts that are specifically expressed in plants during a combination of drought and heat stress. Metabolic profiling of plants subjected to drought, heat stress, or a combination of drought and heat stress revealed that plants subject to a combination of drought and heat stress accumulated sucrose and other sugars such as maltose and glucose. In contrast, Pro that accumulated in plants subjected to drought did not accumulate in plants during a combination of drought and heat stress. Heat stress was found to ameliorate the toxicity of Pro to cells, suggesting that during a combination of drought and heat stress sucrose replaces Pro in plants as the major osmoprotectant. Our results highlight the plasticity of the plant genome and demonstrate its ability to respond to complex environmental conditions that occur in the field.