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      A high‐throughput transient expression system for rice

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          Abstract

          Rice is an important global crop and represents a vital source of calories for many food insecure regions. Efforts to improve this crop by improving yield, nutritional content, stress tolerance, or resilience to climate change are certain to include biotechnological approaches, which rely on the expression of transgenes in planta. The throughput and cost of currently available transgenic expression systems is frequently incompatible with modern, high‐throughput molecular cloning methods. Here, we present a protocol for isolating high yields of green rice protoplasts and for PEG‐mediated transformation of isolated protoplasts. Factors affecting transformation efficiency were investigated, and the resulting protocol is fast, cheap, robust, high‐throughput, and does not require specialist equipment. When coupled to a high‐throughput modular cloning system such as Golden Gate, this transient expression system provides a valuable resource to help break the “design‐build‐test” bottleneck by permitting the rapid screening of large numbers of transgenic expression cassettes prior to stable plant transformation. We used this system to rapidly assess the expression level, subcellular localisation, and protein aggregation pattern of nine single‐gene expression cassettes, which represent the essential component parts of the β‐cyanobacterial carboxysome.

          Abstract

          We provide a protocol for the transient expression of transgenes in rice protoplasts. The method is simple, inexpensive, confers a high efficiency of transformation, and is high‐throughput, thus permitting its use in combination with high‐throughput cloning methods. We demonstrate its utility in assessing the localisation of various cyanobacterial proteins.

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            Enzymatic assembly of DNA molecules up to several hundred kilobases.

            We describe an isothermal, single-reaction method for assembling multiple overlapping DNA molecules by the concerted action of a 5' exonuclease, a DNA polymerase and a DNA ligase. First we recessed DNA fragments, yielding single-stranded DNA overhangs that specifically annealed, and then covalently joined them. This assembly method can be used to seamlessly construct synthetic and natural genes, genetic pathways and entire genomes, and could be a useful molecular engineering tool.
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              Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage

              Summary The spontaneous deamination of cytosine is a major source of C•G to T•A transitions, which account for half of known human pathogenic point mutations. The ability to efficiently convert target A•T base pairs to G•C therefore could advance the study and treatment of genetic diseases. While the deamination of adenine yields inosine, which is treated as guanine by polymerases, no enzymes are known to deaminate adenine in DNA. Here we report adenine base editors (ABEs) that mediate conversion of A•T to G•C in genomic DNA. We evolved a tRNA adenosine deaminase to operate on DNA when fused to a catalytically impaired CRISPR-Cas9. Extensive directed evolution and protein engineering resulted in seventh-generation ABEs (e.g., ABE7.10), that convert target A•T to G•C base pairs efficiently (~50% in human cells) with very high product purity (typically ≥ 99.9%) and very low rates of indels (typically ≤ 0.1%). ABEs introduce point mutations more efficiently and cleanly than a current Cas9 nuclease-based method, induce less off-target genome modification than Cas9, and can install disease-correcting or disease-suppressing mutations in human cells. Together with our previous base editors, ABEs advance genome editing by enabling the direct, programmable introduction of all four transition mutations without double-stranded DNA cleavage.
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                Author and article information

                Contributors
                m.page2@lancaster.ac.uk
                Journal
                Plant Cell Environ
                Plant Cell Environ
                10.1111/(ISSN)1365-3040
                PCE
                Plant, Cell & Environment
                John Wiley and Sons Inc. (Hoboken )
                0140-7791
                1365-3040
                02 April 2019
                July 2019
                : 42
                : 7 ( doiID: 10.1111/pce.v42.7 )
                : 2057-2064
                Affiliations
                [ 1 ] Lancaster Environment Centre Lancaster University Lancaster UK
                Author notes
                [*] [* ] Correspondence

                Mike T. Page, Lancaster Environment Centre, Lancaster University, Lancaster, UK, LA1 4YQ.

                Email: m.page2@ 123456lancaster.ac.uk

                Author information
                https://orcid.org/0000-0002-9715-7076
                https://orcid.org/0000-0002-4477-672X
                https://orcid.org/0000-0001-6059-9359
                Article
                PCE13542 PCE-18-1227.R1
                10.1111/pce.13542
                6618034
                30938460
                a30f3df1-fc53-405d-a52f-fcdc8b1c7182
                © 2019 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 11 December 2018
                : 11 February 2019
                : 24 February 2019
                Page count
                Figures: 4, Tables: 0, Pages: 8, Words: 4561
                Funding
                Funded by: BBSRC Newton Fund
                Award ID: BB/N013662/1
                Categories
                Technical Report
                Technical Report
                Custom metadata
                2.0
                pce13542
                July 2019
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.6.5 mode:remove_FC converted:10.07.2019

                Plant science & Botany
                carboxysome,cellular localisation,confocal microscopy,golden gate,high‐throughput,oryza sativa,protoplasts,rice,synthetic biology,transient expression

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