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      Machine Learning-Based Identification of Suicidal Risk in Patients With Schizophrenia Using Multi-Level Resting-State fMRI Features

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          Abstract

          Background

          Some studies suggest that as much as 40% of all causes of death in a group of patients with schizophrenia can be attributed to suicides and compared with the general population, patients with schizophrenia have an 8.5-fold greater suicide risk (SR). There is a vital need for accurate and reliable methods to predict the SR among patients with schizophrenia based on biological measures. However, it is unknown whether the suicidal risk in schizophrenia can be related to alterations in spontaneous brain activity, or if the resting-state functional magnetic resonance imaging (rsfMRI) measures can be used alongside machine learning (ML) algorithms in order to identify patients with SR.

          Methods

          Fifty-nine participants including patients with schizophrenia with and without SR as well as age and gender-matched healthy underwent 13 min resting-state functional magnetic resonance imaging. Both static and dynamic indexes of the amplitude of low-frequency fluctuation (ALFF), the fractional amplitude of low-frequency fluctuations (fALFF), regional homogeneity as well as functional connectivity (FC) were calculated and used as an input for five machine learning algorithms: Gradient boosting (GB), LASSO, Logistic Regression (LR), Random Forest and Support Vector Machine.

          Results

          All groups revealed different intra-network functional connectivity in ventral DMN and anterior SN. The best performance was reached for the LASSO applied to FC with an accuracy of 70% and AUROC of 0.76 ( p < 0.05). Significant classification ability was also reached for GB and LR using fALFF and ALFF measures.

          Conclusion

          Our findings suggest that SR in schizophrenia can be seen on the level of DMN and SN functional connectivity alterations. ML algorithms were able to significantly differentiate SR patients. Our results could be useful in developing neuromarkers of SR in schizophrenia based on non-invasive rsfMRI.

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          Most cited references62

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            • Article: not found

            Regression Shrinkage and Selection Via the Lasso

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              • Article: not found

              Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

              An anatomical parcellation of the spatially normalized single-subject high-resolution T1 volume provided by the Montreal Neurological Institute (MNI) (D. L. Collins et al., 1998, Trans. Med. Imag. 17, 463-468) was performed. The MNI single-subject main sulci were first delineated and further used as landmarks for the 3D definition of 45 anatomical volumes of interest (AVOI) in each hemisphere. This procedure was performed using a dedicated software which allowed a 3D following of the sulci course on the edited brain. Regions of interest were then drawn manually with the same software every 2 mm on the axial slices of the high-resolution MNI single subject. The 90 AVOI were reconstructed and assigned a label. Using this parcellation method, three procedures to perform the automated anatomical labeling of functional studies are proposed: (1) labeling of an extremum defined by a set of coordinates, (2) percentage of voxels belonging to each of the AVOI intersected by a sphere centered by a set of coordinates, and (3) percentage of voxels belonging to each of the AVOI intersected by an activated cluster. An interface with the Statistical Parametric Mapping package (SPM, J. Ashburner and K. J. Friston, 1999, Hum. Brain Mapp. 7, 254-266) is provided as a freeware to researchers of the neuroimaging community. We believe that this tool is an improvement for the macroscopical labeling of activated area compared to labeling assessed using the Talairach atlas brain in which deformations are well known. However, this tool does not alleviate the need for more sophisticated labeling strategies based on anatomical or cytoarchitectonic probabilistic maps.
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                Author and article information

                Contributors
                Journal
                Front Neurosci
                Front Neurosci
                Front. Neurosci.
                Frontiers in Neuroscience
                Frontiers Media S.A.
                1662-4548
                1662-453X
                11 January 2021
                2020
                : 14
                : 605697
                Affiliations
                [1] 1Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University , Kraków, Poland
                [2] 2Department of Psychology of Individual Differences, Psychological Diagnosis, and Psychometrics, Institute of Psychology, University of Social Sciences and Humanities , Warsaw, Poland
                [3] 3Institute of Computer Science, Faculty of Mathematics and Computer Science, Jagiellonian University , Kraków, Poland
                [4] 4Department of Community Psychiatry, Jagiellonian University Medical College , Kraków, Poland
                [5] 5Department of Adult Psychiatry, Jagiellonian University Medical College , Kraków, Poland
                [6] 6Department of Affective Disorders, Jagiellonian University Medical College , Kraków, Poland
                Author notes

                Edited by: Qiuyun Fan, Harvard Medical School, United States

                Reviewed by: Xize Jia, Hangzhou Normal University, China; Rosaleena Mohanty, Karolinska Institutet (KI), Sweden

                *Correspondence: Anna M. Sobczak, ann.marie.sobczak@ 123456gmail.com
                Bartosz Bohaterewicz, bohaterewicz@ 123456gmail.com

                This article was submitted to Brain Imaging Methods, a section of the journal Frontiers in Neuroscience

                Article
                10.3389/fnins.2020.605697
                7829970
                33505239
                a25078b7-4751-4ce1-a6b1-628817aaeff1
                Copyright © 2021 Bohaterewicz, Sobczak, Podolak, Wójcik, Mȩtel, Chrobak, Fa̧frowicz, Siwek, Dudek and Marek.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 12 September 2020
                : 26 November 2020
                Page count
                Figures: 3, Tables: 4, Equations: 0, References: 64, Pages: 11, Words: 0
                Funding
                Funded by: Narodowym Centrum Nauki 10.13039/501100004442
                Funded by: Fundacja na rzecz Nauki Polskiej 10.13039/501100001870
                Categories
                Neuroscience
                Original Research

                Neurosciences
                schizophrenia,suicidal ideations,machine learning,resting state fmri,mental pain,classification,gradient boosting,feature selection

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